Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5Li4	4052	2024-09-28	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	14.11	0.01	2.275	24.65	0.00	15.2	83.7	1.1	-3.90	4.20	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7XoG	33347	2024-09-24	2022-05-01	3.5	4.22	3.58	3.7	0.051	2.66	18.0	0.11	17.98	0.01	1.481	13.64	2.61	5.8	94.2	0.0	-2.67	0.75	0.63	1.50	3.8	0.045	1.42	0.0	0.05	16.44	0.02	2.391	8.68	2.61	4.8	95.1	0.1	0.91	2.04	0.86	0.84	2.02	8808	1044	21	0	57	0	0	logfile
✔	8SS3	40742	2024-09-29	2023-05-08	3.21	3.40	3.30	3.4	0.047	1.90	0.0	0.69	28.24	0.01	2.123	11.20	0.52	7.6	91.7	0.7	-6.01	0.62	0.80	3.60	3.4	0.003	1.27	0.0	0.14	21.96	0.00	2.378	8.06	2.84	7.0	92.8	0.3	0.29	1.02	0.65	0.87	3.02	19887	2280	12	0	65	0	0	logfile
✔	8JWE	36680	2024-09-27	2023-06-28	2.74	2.66	2.57	2.7	0.046	2.12	0.0	0.15	13.17	0.01	1.322	4.95	0.00	6.2	93.5	0.4	-4.49	0.67	0.84	4.70	2.7	0.003	0.62	0.0	0.04	15.96	0.00	2.592	4.30	1.70	3.1	96.9	0.0	0.24	1.14	0.71	0.87	4.07	14861	1967	7	0	0	0	0	logfile
✔	6HE7	0211	2024-09-29	2018-08-20	3.69	3.80	—	3.8	0.039	3.60	213.0	0.21	17.65	0.03	2.081	3.03	4.93	5.6	92.9	1.6	-2.44	0.64	0.70	2.28	3.8	0.012	0.74	0.0	0.05	17.62	0.00	1.914	10.08	3.12	3.2	96.8	0.0	0.04	0.89	0.62	0.78	1.58	23821	3059	14	0	0	0	0	logfile
✔	8DFA	27403	2024-09-23	2022-06-21	2.8	3.02	2.79	3.0	0.037	2.80	322.0	0.32	16.53	0.01	1.474	3.88	1.63	5.3	94.6	0.0	-1.30	0.69	0.65	3.15	3.0	0.004	0.70	0.0	0.06	17.85	0.01	2.278	3.20	1.42	5.1	94.9	0.0	-0.43	1.78	0.80	0.83	2.74	46813	2855	13	64	0	0	23023	logfile
✔	6HE5	0210	2024-09-30	2018-08-20	4.12	4.16	—	4.2	0.036	3.51	183.0	0.20	17.65	0.03	2.236	2.09	4.51	5.3	92.5	2.2	-2.68	0.54	0.60	—	4.1	0.005	0.87	0.0	0.05	14.56	0.01	2.355	18.86	0.00	4.1	95.7	0.2	-0.68	1.74	0.57	0.75	—	24633	3162	20	0	0	0	0	logfile
✔	7R4R	14315	2024-09-24	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.32	18.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.005	1.43	17.0	0.24	16.32	0.00	1.805	22.48	5.22	8.9	91.1	0.1	-2.49	1.29	0.67	0.59	-0.26	50505	3293	12	0	43	0	24171	logfile
✔	6HE4	0209	2024-09-26	2018-08-20	4.85	4.88	—	4.8	0.036	3.65	111.0	0.21	19.33	0.03	1.953	1.83	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.08	0.0	0.05	15.23	0.01	1.851	29.15	0.00	8.0	91.3	0.7	-1.45	1.95	0.58	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	6Kio	9996	2024-09-27	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.01	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.75	0.0	0.04	17.41	0.00	2.377	8.16	2.64	8.2	91.4	0.4	-1.49	1.65	0.65	0.77	1.40	15091	968	3	0	0	0	7442	logfile
✔	6KiQ	9997	2024-09-27	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.20	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.003	0.77	0.0	0.04	17.69	0.01	2.426	7.29	3.48	9.3	90.1	0.6	-2.36	1.74	0.62	0.74	1.07	15093	968	3	0	0	0	7444	logfile
✔	3J1B	5391	2024-09-26	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.85	0.0	0.05	15.00	0.01	2.426	12.93	0.00	4.8	94.4	0.8	0.80	2.24	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	7UEG	26474	2024-09-24	2022-03-21	4.0	4.46	4.14	4.2	0.034	0.79	6.0	0.05	12.16	0.01	0.436	24.88	0.00	9.0	90.9	0.2	-2.77	0.67	0.78	—	4.1	0.032	0.99	4.0	0.05	14.34	0.01	1.817	21.96	1.59	11.3	88.5	0.2	-3.08	1.28	0.69	0.83	—	49968	6480	36	0	0	0	0	logfile
✔	6WU6	21906	2024-09-29	2020-05-04	3.6	3.59	—	3.7	0.033	1.50	0.0	0.11	16.34	0.01	2.228	26.53	1.34	13.1	86.9	0.0	-4.47	0.51	0.64	0.94	3.6	0.005	1.24	0.0	0.06	18.34	0.01	1.802	16.36	4.19	9.1	90.9	0.0	-1.90	1.18	0.50	0.66	0.97	21969	2781	21	0	18	0	0	logfile
✔	8GRN	34209	2024-09-26	2022-09-02	2.5	3.22	2.91	3.2	0.033	3.22	177.0	0.26	23.95	0.02	1.568	20.38	36.57	14.8	77.8	7.4	-5.62	0.54	0.70	2.38	3.2	0.004	0.84	0.0	0.05	19.13	0.01	2.530	7.95	3.40	9.9	89.8	0.3	-0.26	0.92	0.44	0.70	2.45	11602	1432	4	0	2	0	0	logfile
✔	7EFD	31084	2024-09-23	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.76	0.0	0.05	14.63	0.00	2.592	3.49	0.00	4.0	96.0	0.0	0.85	0.48	0.80	0.84	6.22	4004	480	8	0	4	156	0	logfile
✔	7JZ2	22528	2024-09-29	2020-09-01	2.5	2.95	—	3.0	0.033	1.28	0.0	0.53	14.26	0.00	2.070	35.46	1.38	3.6	96.4	0.0	-2.16	0.61	0.72	2.30	3.0	0.004	1.17	0.0	0.06	17.11	0.00	1.796	10.31	1.76	3.9	96.1	0.0	0.39	1.18	0.52	0.71	2.62	22866	2871	24	0	24	0	0	logfile
✔	7D6X	30595	2024-09-25	2020-10-02	2.88	3.17	—	3.1	0.032	1.74	4.0	0.41	14.91	0.01	1.988	10.06	0.22	11.7	88.1	0.3	-2.90	0.74	0.88	3.52	3.1	0.003	1.06	0.0	0.06	16.20	0.01	1.787	5.64	2.56	9.2	90.8	0.0	-0.86	0.37	0.71	0.88	3.09	8711	1097	6	0	6	0	0	logfile
✔	8GS8	34225	2024-09-25	2022-09-05	2.86	3.07	2.83	3.1	0.032	1.67	0.0	0.52	14.96	0.01	2.168	12.06	0.67	7.9	92.1	0.1	-4.22	0.62	0.84	3.93	3.1	0.004	1.08	0.0	0.06	16.19	0.00	1.805	7.69	1.00	2.5	97.5	0.0	0.91	0.83	0.62	0.86	3.59	8637	1090	8	0	7	0	0	logfile
✔	3J9E	6240	2024-09-23	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.74	0.0	0.04	17.95	0.00	2.522	8.15	3.89	7.6	91.5	1.0	0.82	1.24	0.74	0.85	2.95	4098	520	1	0	0	0	0	logfile

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