Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7D6X	30595	2024-09-25	2020-10-02	2.88	3.17	—	3.1	0.032	1.74	4.0	0.41	14.91	0.01	1.988	10.06	0.22	11.7	88.1	0.3	-2.90	0.74	0.88	3.52	3.1	0.003	1.06	0.0	0.06	16.20	0.01	1.787	5.64	2.56	9.2	90.8	0.0	-0.86	0.37	0.71	0.88	3.09	8711	1097	6	0	6	0	0	logfile
✔	8GS8	34225	2024-09-25	2022-09-05	2.86	3.07	2.83	3.1	0.032	1.67	0.0	0.52	14.96	0.01	2.168	12.06	0.67	7.9	92.1	0.1	-4.22	0.62	0.84	3.93	3.1	0.004	1.08	0.0	0.06	16.19	0.00	1.805	7.69	1.00	2.5	97.5	0.0	0.91	0.83	0.62	0.86	3.59	8637	1090	8	0	7	0	0	logfile
✔	8K6K	36921	2024-09-24	2023-07-25	2.4	3.06	2.44	2.9	0.031	1.35	0.0	0.48	17.79	0.01	2.147	7.53	2.15	4.1	95.9	0.0	0.87	0.76	0.90	4.69	2.9	0.004	1.08	0.0	0.06	17.50	0.00	1.802	6.59	1.02	4.2	95.8	0.0	0.95	0.23	0.76	0.90	4.63	8593	1088	5	0	6	0	0	logfile
✔	8F0A	28754	2024-09-28	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	3.4	0.003	0.71	0.0	0.05	14.01	0.00	2.317	5.56	0.53	1.0	99.0	0.0	1.19	1.39	0.72	0.77	3.69	18060	1212	9	0	0	0	9189	logfile
✔	7RTM	24683	2024-09-25	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.86	0.0	0.04	16.11	0.00	2.352	10.47	2.00	4.7	95.3	0.1	0.01	4.69	0.66	0.78	1.46	9161	1142	6	0	12	0	0	logfile
✔	7D6V	30594	2024-09-25	2020-10-02	2.53	2.74	—	2.7	0.031	1.56	2.0	0.50	14.91	0.01	2.186	9.57	0.00	9.6	90.3	0.1	-0.92	0.76	0.88	4.90	2.7	0.004	1.07	1.0	0.06	16.32	0.01	1.801	5.94	2.21	8.7	91.2	0.1	-0.19	0.33	0.72	0.89	3.90	8793	1104	6	0	7	0	0	logfile
✔	8JEK	36191	2024-09-25	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.004	1.09	0.0	0.06	16.81	0.01	1.798	6.26	2.26	5.1	94.8	0.1	0.45	0.21	0.71	0.88	4.17	8623	1089	5	0	6	0	0	logfile
✔	8F0U	28781	2024-09-29	2022-11-04	3.1	3.37	3.22	3.6	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.67	0.00	0.8	99.2	0.0	0.72	0.31	0.31	0.91	3.5	0.003	0.63	0.0	0.05	14.17	0.00	2.204	5.16	1.49	5.0	95.0	0.0	-0.77	2.15	0.54	0.68	1.69	72240	4848	36	0	0	0	36756	logfile
✔	8JEJ	36190	2024-09-25	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.34	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.004	1.10	0.0	0.06	17.79	0.01	1.802	6.46	2.14	4.2	95.7	0.1	0.71	0.25	0.69	0.88	4.91	8604	1089	5	0	6	0	0	logfile
✔	8XCN	38248	2024-09-24	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.13	0.0	0.06	17.34	0.01	1.610	14.34	3.28	4.2	95.8	0.0	0.32	1.16	0.74	0.83	2.28	8601	1089	5	0	6	0	0	logfile
✔	8K6J	36920	2024-09-24	2023-07-25	2.77	3.51	2.84	3.3	0.030	1.26	0.0	0.49	17.76	0.01	2.130	8.32	2.49	4.1	95.9	0.0	0.88	0.76	0.86	3.44	3.3	0.005	1.09	0.0	0.06	17.36	0.00	1.792	6.89	1.93	4.5	95.5	0.0	0.76	0.27	0.75	0.85	3.53	8580	1087	5	0	6	0	0	logfile
✔	8XCM	38247	2024-09-24	2023-12-09	3.08	3.84	3.13	3.7	0.030	1.33	0.0	0.46	17.72	0.01	2.118	18.72	0.68	4.8	95.2	0.0	-0.04	0.75	0.83	2.38	3.7	0.004	1.07	0.0	0.06	17.61	0.00	1.803	11.43	3.95	4.8	95.2	0.0	0.41	0.48	0.74	0.83	2.43	8605	1089	5	0	6	0	0	logfile
✔	5LJV	4062	2024-09-27	2016-07-21	3.64	3.75	—	3.7	0.030	2.85	85.0	0.16	18.81	0.02	2.070	21.28	11.82	7.4	89.7	2.9	-4.53	0.71	0.84	2.85	3.7	0.003	0.78	0.0	0.05	17.01	0.01	1.928	9.50	3.30	2.8	97.2	0.0	0.27	2.48	0.72	0.81	1.72	15000	1950	12	0	12	0	0	logfile
✔	6C9i	7436	2024-09-29	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.003	0.43	0.0	0.04	15.15	0.00	2.594	3.37	0.69	0.0	100.0	0.0	3.78	2.43	0.71	0.89	3.63	23700	3087	24	0	0	0	0	logfile
✔	8DJM	27461	2024-09-24	2022-07-01	3.23	3.66	3.31	3.6	0.029	1.53	2.0	1.04	32.65	0.00	1.844	8.23	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	3.7	0.003	1.37	0.0	0.14	21.03	0.00	2.597	4.61	1.37	2.4	97.6	0.0	1.55	0.94	0.60	0.83	2.40	7032	862	7	0	8	0	0	logfile
✔	6W8o	21576	2024-09-24	2020-03-20	3.4	4.30	—	4.1	0.029	1.20	3.0	0.05	17.62	0.01	1.161	20.04	11.79	6.7	93.3	0.0	-3.22	0.57	0.81	1.49	4.2	0.004	0.95	0.0	0.05	18.01	0.00	2.495	15.40	7.76	5.7	94.3	0.0	0.48	1.15	0.55	0.79	1.58	6332	832	2	0	0	0	0	logfile
✔	8DJK	27460	2024-09-24	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	32.03	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	3.7	0.003	1.34	0.0	0.14	20.85	0.00	2.532	4.92	2.04	3.4	96.6	0.0	1.38	0.51	0.60	0.82	2.27	7091	870	7	0	8	0	0	logfile
✔	8DMG	27536	2024-09-28	2022-07-08	4.4	5.39	4.50	4.6	0.029	2.33	20.0	0.12	16.95	0.01	0.312	28.72	6.80	6.0	92.3	1.7	-2.43	0.79	0.61	—	4.6	0.006	0.96	0.0	0.04	13.80	0.01	2.149	84.69	0.00	7.0	92.9	0.0	-0.13	2.25	0.93	0.85	—	16844	2068	4	0	18	0	202	logfile
✔	7TDD	25825	2024-09-28	2021-12-30	3.5	2.37	2.70	2.8	0.029	2.07	183.0	0.29	12.65	0.01	2.192	1.90	0.55	1.5	98.4	0.1	-0.52	0.67	0.64	2.40	2.1	0.005	0.59	0.0	0.04	15.52	0.00	2.305	5.34	0.74	2.4	97.6	0.1	2.20	3.04	0.67	0.69	2.72	20031	1211	2	0	0	0	10025	logfile
✔	7ASK	11895	2024-09-26	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.17	2.0	0.05	15.44	0.01	2.020	15.71	0.08	17.8	80.7	1.5	-3.06	1.29	0.18	0.61	—	12285	1523	2	0	2	0	0	logfile

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