Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J1B	5391	2024-09-26	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.85	0.0	0.05	15.00	0.01	2.426	12.93	0.00	4.8	94.4	0.8	0.80	2.24	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	3J06	5185	2024-09-26	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.60	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.3	0.004	0.89	1.0	0.04	20.14	0.01	2.278	13.90	4.74	7.2	91.2	1.6	-2.59	1.24	0.55	0.78	2.12	62916	7595	98	147	0	0	0	logfile
✔	8DFA	27403	2024-09-23	2022-06-21	2.8	3.02	2.79	3.0	0.037	2.80	322.0	0.32	16.53	0.01	1.474	3.88	1.63	5.3	94.6	0.0	-1.30	0.69	0.65	3.15	3.0	0.004	0.70	0.0	0.06	17.85	0.01	2.278	3.20	1.42	5.1	94.9	0.0	-0.43	1.78	0.80	0.83	2.74	46813	2855	13	64	0	0	23023	logfile
✔	3LoS	5137	2024-09-26	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.20	0.0	0.05	15.74	0.01	2.369	22.62	0.00	19.4	77.4	3.2	-4.64	1.35	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	5J8V	8073	2024-09-29	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.004	0.98	0.0	0.04	9.14	0.00	2.297	6.53	0.32	12.7	85.8	1.5	-1.03	0.82	0.75	0.75	—	73616	13812	4	0	0	0	0	logfile
✔	8JFL	36213	2024-09-27	2023-05-18	2.9	2.17	3.05	1.9	0.014	1.87	213.0	0.13	16.11	0.01	1.101	28.45	3.87	3.9	96.1	0.0	-0.63	0.68	0.66	1.90	1.9	0.004	0.73	0.0	0.04	17.82	0.01	2.409	13.21	2.99	3.3	96.7	0.0	0.39	1.28	0.75	0.79	2.46	65884	8204	20	0	12	0	0	logfile
✔	6HE7	0211	2024-09-29	2018-08-20	3.69	3.80	—	3.8	0.039	3.60	213.0	0.21	17.65	0.03	2.081	3.03	4.93	5.6	92.9	1.6	-2.44	0.64	0.70	2.28	3.8	0.012	0.74	0.0	0.05	17.62	0.00	1.914	10.08	3.12	3.2	96.8	0.0	0.04	0.89	0.62	0.78	1.58	23821	3059	14	0	0	0	0	logfile
✔	7PBX	13308	2024-09-26	2021-08-02	3.43	3.70	3.43	3.1	0.032	2.53	206.0	0.21	19.43	0.02	0.597	32.75	11.71	3.1	95.3	1.6	1.29	0.69	0.65	1.83	3.2	0.004	0.80	0.0	0.04	17.23	0.00	1.892	11.91	1.51	4.5	95.4	0.1	1.17	1.42	0.91	0.87	2.16	59472	8015	35	0	28	0	0	logfile
✔	6HE5	0210	2024-09-30	2018-08-20	4.12	4.16	—	4.2	0.036	3.51	183.0	0.20	17.65	0.03	2.236	2.09	4.51	5.3	92.5	2.2	-2.68	0.54	0.60	—	4.1	0.005	0.87	0.0	0.05	14.56	0.01	2.355	18.86	0.00	4.1	95.7	0.2	-0.68	1.74	0.57	0.75	—	24633	3162	20	0	0	0	0	logfile
✔	7TDD	25825	2024-09-28	2021-12-30	3.5	2.37	2.70	2.8	0.029	2.07	183.0	0.29	12.65	0.01	2.192	1.90	0.55	1.5	98.4	0.1	-0.52	0.67	0.64	2.40	2.1	0.005	0.59	0.0	0.04	15.52	0.00	2.305	5.34	0.74	2.4	97.6	0.1	2.20	3.04	0.67	0.69	2.72	20031	1211	2	0	0	0	10025	logfile
✔	5G04	3385	2024-09-27	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.65	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.011	0.92	1.0	0.04	18.47	0.01	1.967	18.34	3.67	5.4	94.0	0.5	0.20	1.70	0.83	0.77	0.76	65481	8322	22	0	3	0	0	logfile
✔	8GRN	34209	2024-09-26	2022-09-02	2.5	3.22	2.91	3.2	0.033	3.22	177.0	0.26	23.95	0.02	1.568	20.38	36.57	14.8	77.8	7.4	-5.62	0.54	0.70	2.38	3.2	0.004	0.84	0.0	0.05	19.13	0.01	2.530	7.95	3.40	9.9	89.8	0.3	-0.26	0.92	0.44	0.70	2.45	11602	1432	4	0	2	0	0	logfile
✔	6MU2	9244	2024-09-24	2018-10-22	3.9	4.63	—	4.5	0.012	2.05	157.0	0.17	15.10	0.01	1.078	53.92	14.66	11.0	87.3	1.7	-1.58	0.70	0.68	0.40	4.5	0.005	1.01	1.0	0.06	16.08	0.00	2.390	21.65	8.93	11.0	88.7	0.4	-0.24	0.96	0.72	0.72	0.27	51404	8680	4	0	0	0	0	logfile
✔	7EGQ	31138	2024-09-28	2021-03-25	3.35	3.74	—	3.5	0.008	1.56	155.0	0.10	18.69	0.01	1.423	23.53	9.99	10.5	88.9	0.6	-3.84	0.84	0.83	1.81	3.5	0.005	0.72	0.0	0.04	17.76	0.00	2.090	10.45	4.04	6.8	93.2	0.0	-1.17	1.59	0.84	0.84	1.87	54547	6644	32	116	29	0	0	logfile
✔	6KiQ	9997	2024-09-27	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.20	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.003	0.77	0.0	0.04	17.69	0.01	2.426	7.29	3.48	9.3	90.1	0.6	-2.36	1.74	0.62	0.74	1.07	15093	968	3	0	0	0	7444	logfile
✔	7PBJ	13293	2024-09-26	2021-08-02	3.4	3.54	3.40	3.2	0.018	2.20	140.0	0.13	19.50	0.01	0.650	29.74	11.71	2.5	96.9	0.6	1.69	0.71	0.67	2.07	3.2	0.003	0.70	0.0	0.04	17.48	0.00	1.943	11.03	1.35	3.2	96.7	0.1	1.42	3.42	0.89	0.85	1.73	59486	8015	42	0	28	14	0	logfile
✔	7Woo	32653	2024-09-27	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.12	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.005	0.90	1.0	0.05	16.63	0.01	2.312	15.63	2.85	9.2	90.5	0.3	-0.93	1.65	0.48	0.46	0.27	66949	8644	12	0	0	0	0	logfile
✔	7R4R	14315	2024-09-24	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.32	18.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.005	1.43	17.0	0.24	16.32	0.00	1.805	22.48	5.22	8.9	91.1	0.1	-2.49	1.29	0.67	0.59	-0.26	50505	3293	12	0	43	0	24171	logfile
✔	5TFY	8405	2024-09-27	2016-09-27	3.4	4.55	—	4.1	0.007	1.91	124.0	0.09	13.18	0.00	1.377	21.22	3.79	4.9	95.1	0.0	-2.21	0.47	0.74	3.32	4.1	0.004	0.73	0.0	0.05	16.52	0.00	2.294	28.29	3.09	3.4	96.6	0.0	-1.11	1.82	0.43	0.70	2.24	65182	4264	26	0	0	0	33046	logfile
✔	4Ui9	2924	2024-09-27	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.43	0.00	2.213	11.88	3.23	5.4	94.2	0.4	0.76	2.86	0.89	0.83	1.12	66453	8472	25	0	5	0	0	logfile

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