Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QoE	18535	2024-09-28	2023-09-28	3.16	3.80	3.17	3.5	0.019	2.44	121.0	0.22	14.31	0.01	1.749	4.38	0.84	3.4	96.6	0.0	-2.30	0.75	0.78	2.78	3.6	0.002	0.53	0.0	0.04	15.49	0.00	2.469	2.30	0.42	2.9	97.1	0.0	1.50	0.69	0.73	0.80	1.75	17816	1136	2	0	0	0	9072	logfile
✔	5Li4	4052	2024-09-28	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	14.11	0.01	2.275	24.65	0.00	15.2	83.7	1.1	-3.90	4.20	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	6HE4	0209	2024-09-26	2018-08-20	4.85	4.88	—	4.8	0.036	3.65	111.0	0.21	19.33	0.03	1.953	1.83	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.08	0.0	0.05	15.23	0.01	1.851	29.15	0.00	8.0	91.3	0.7	-1.45	1.95	0.58	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	8P2M	17370	2024-09-23	2023-05-16	3.82	5.95	4.51	4.2	0.012	1.85	111.0	0.14	13.83	0.01	2.190	2.42	1.90	4.5	95.5	0.0	-1.71	0.87	0.76	-0.22	4.2	0.003	0.79	0.0	0.04	15.15	0.00	2.095	14.57	1.03	2.9	97.1	0.0	1.46	1.18	0.87	0.75	0.07	46702	5819	9	0	0	0	0	logfile
✔	6L42	0828	2024-09-27	2019-10-15	3.4	3.83	—	3.7	0.013	3.32	109.0	0.17	16.55	0.02	1.223	41.56	6.61	11.4	86.6	2.0	-5.16	0.79	0.75	1.25	3.7	0.003	0.88	0.0	0.05	16.78	0.01	2.084	9.82	2.45	10.8	89.0	0.3	-2.53	0.81	0.82	0.83	1.44	14827	1864	2	0	1	0	0	logfile
✔	7R4Q	14314	2024-09-24	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	16.09	0.02	1.866	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.005	1.10	8.0	0.17	15.29	0.01	1.971	20.81	1.38	7.9	92.1	0.0	-1.91	1.65	0.62	0.55	0.51	51420	3414	13	0	43	0	24182	logfile
✔	5MPA	3535	2024-09-27	2016-12-16	4.5	4.58	—	4.5	0.026	2.51	100.0	0.13	15.68	0.02	1.354	4.50	1.95	7.7	90.6	1.8	-4.17	0.58	0.67	—	4.5	0.003	0.82	0.0	0.05	13.64	0.00	1.913	12.69	0.05	3.9	96.0	0.1	-0.30	1.82	0.57	0.81	—	67883	8674	40	0	12	0	0	logfile
✔	8DFo	27409	2024-09-30	2022-06-22	3.1	3.40	3.29	7.2	0.022	1.64	93.0	0.16	18.53	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.004	0.82	0.0	0.05	18.47	0.01	2.430	16.09	2.05	5.8	94.2	0.0	-1.28	1.98	0.46	0.42	0.55	23861	2912	13	45	0	0	0	logfile
✔	8WA0	37387	2024-09-26	2023-09-06	2.7	3.55	2.95	3.1	0.015	1.73	88.0	0.15	13.64	0.01	1.455	4.86	5.39	2.7	97.3	0.0	0.57	0.82	0.84	3.04	3.1	0.003	0.64	0.0	0.04	14.92	0.00	2.000	5.53	1.46	2.8	97.2	0.0	0.69	1.07	0.83	0.87	2.81	61128	8354	26	19	4	0	0	logfile
✔	5LJV	4062	2024-09-27	2016-07-21	3.64	3.75	—	3.7	0.030	2.85	85.0	0.16	18.81	0.02	2.070	21.28	11.82	7.4	89.7	2.9	-4.53	0.71	0.84	2.85	3.7	0.003	0.78	0.0	0.05	17.01	0.01	1.928	9.50	3.30	2.8	97.2	0.0	0.27	2.48	0.72	0.81	1.72	15000	1950	12	0	12	0	0	logfile
✔	8SWN	40821	2024-09-28	2023-05-19	3.1	3.32	3.08	3.3	0.020	1.67	85.0	0.20	13.42	0.01	1.789	0.38	0.00	1.2	98.8	0.0	-0.67	0.67	0.86	4.37	3.3	0.002	0.51	0.0	0.04	15.30	0.00	1.827	2.97	0.92	1.3	98.7	0.0	2.41	2.22	0.66	0.85	2.47	18422	1135	2	0	5	0	9269	logfile
✔	7XZ5	33525	2024-09-27	2022-06-02	3.1	2.85	3.00	3.0	0.020	1.55	81.0	0.21	14.34	0.00	2.103	2.18	0.00	1.7	98.3	0.0	1.35	0.60	0.75	2.79	3.0	0.003	0.54	0.0	0.04	15.66	0.00	2.359	3.33	1.01	2.1	97.9	0.0	1.31	0.62	0.62	0.80	2.94	16456	1052	6	0	1	0	8189	logfile
✔	6XBW	22121	2024-09-26	2020-06-07	3.37	3.48	—	3.4	0.010	1.30	80.0	0.09	15.50	0.01	1.049	8.64	0.61	3.3	96.5	0.3	-5.55	0.74	0.85	2.39	3.4	0.004	0.73	0.0	0.04	16.72	0.00	2.072	9.28	2.90	5.1	94.9	0.1	-0.23	0.70	0.75	0.89	2.14	63090	8186	38	0	18	0	0	logfile
✔	7CXM	30492	2024-09-29	2020-09-02	2.9	3.58	—	3.3	0.010	1.59	80.0	0.10	19.16	0.01	1.572	20.06	12.89	9.0	90.4	0.6	-4.28	0.83	0.88	3.19	3.3	0.003	0.75	1.0	0.04	18.27	0.00	2.091	9.73	3.72	7.8	92.0	0.2	-1.57	0.54	0.82	0.87	2.96	21295	2563	12	57	8	0	0	logfile
✔	5W65	8775	2024-09-23	2017-06-16	4.3	4.07	—	3.9	0.009	1.65	79.0	0.10	14.85	0.01	1.089	88.79	4.61	8.9	86.3	4.8	-3.52	0.74	0.65	—	3.9	0.004	0.88	0.0	0.05	15.33	0.01	2.248	16.29	0.00	7.7	91.5	0.8	-0.85	3.84	0.83	0.79	—	47308	5599	26	105	60	0	0	logfile
✔	6VSC	21376	2024-09-25	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.30	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.78	0.0	0.04	18.22	0.01	2.471	14.52	3.19	0.3	99.6	0.1	0.23	1.20	0.87	0.85	3.32	9670	1175	5	0	0	0	0	logfile
✔	6VSA	21373	2024-09-25	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.6	0.004	0.58	0.0	0.04	17.32	0.00	2.610	8.13	1.74	0.3	99.7	0.1	0.59	1.13	0.93	0.90	4.40	9712	1175	10	0	0	42	0	logfile
✔	9ARH	43782	2024-09-29	2024-02-23	3.69	4.00	3.71	4.0	0.013	1.58	74.0	0.11	12.97	0.01	1.335	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.003	0.70	0.0	0.04	14.49	0.00	2.444	7.29	4.54	8.0	92.0	0.1	-0.90	1.62	0.69	0.73	1.10	22792	3182	10	0	6	0	0	logfile
✔	8oLU	16963	2024-09-23	2023-03-30	2.59	2.36	2.57	2.6	0.018	2.11	67.0	0.10	17.27	0.03	2.180	7.21	5.92	4.0	95.4	0.6	-2.77	0.82	0.89	4.42	2.4	0.003	0.66	1.0	0.04	17.40	0.00	2.066	8.20	1.44	1.6	98.3	0.0	1.34	1.20	0.77	0.85	3.89	48930	6316	30	0	2	0	0	logfile
✔	7QCU	13899	2024-09-24	2021-11-25	3.25	4.07	—	3.7	0.013	2.18	65.0	0.16	20.45	0.03	1.868	25.18	6.94	6.9	93.1	0.0	-1.89	0.80	0.66	2.63	3.6	0.004	0.84	0.0	0.05	16.86	0.00	2.301	8.27	2.53	6.5	93.5	0.0	-1.43	0.68	0.87	0.82	2.61	7069	888	6	0	20	0	0	logfile

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