Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NTM	12591	2024-09-25	2021-03-10	2.86	3.19	2.97	2.8	0.013	1.61	7.0	0.10	15.61	0.00	1.962	17.08	1.77	6.2	93.8	0.0	-3.56	0.98	0.97	4.63	2.8	0.004	0.57	0.0	0.05	15.99	0.00	2.041	2.82	0.84	2.3	97.7	0.0	0.01	0.92	0.99	0.98	5.37	10336	1388	8	0	8	0	0	logfile
✔	7YC8	33736	2024-09-24	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.971	60.55	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	6VRS	21371	2024-09-26	2020-02-09	2.7	3.22	—	2.9	0.008	1.49	5.0	0.11	14.48	0.01	2.012	2.39	1.82	3.1	96.6	0.3	-0.31	0.95	0.92	6.32	2.9	0.003	0.49	0.0	0.04	15.01	0.00	2.047	3.52	0.08	2.0	98.0	0.0	2.19	1.00	0.93	0.90	4.46	12208	1548	12	0	8	16	0	logfile
✔	7PMD	13529	2024-09-25	2021-09-02	2.9	4.01	2.83	3.4	0.012	1.06	1.0	0.06	15.52	0.01	1.728	3.61	0.09	0.2	99.8	0.0	-1.33	0.94	0.88	3.40	3.4	0.003	0.67	0.0	0.04	15.55	0.00	1.991	5.24	0.74	1.7	98.3	0.0	1.76	1.26	0.93	0.88	2.91	10189	1264	7	0	6	0	0	logfile
✔	8RK4	19259	2024-09-24	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.920	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.65	0.0	0.04	11.91	0.00	2.570	9.10	0.00	4.0	95.7	0.3	-0.96	0.95	0.94	0.72	—	8373	1119	3	0	0	0	0	logfile
✔	7YCG	33738	2024-09-24	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.68	0.0	0.04	24.51	0.00	1.848	29.82	0.00	0.0	0.0	0.0	—	0.32	0.95	0.88	—	8661	0	3	404	4	0	0	logfile
✔	6VSA	21373	2024-09-25	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.6	0.004	0.58	0.0	0.04	17.32	0.00	2.610	8.13	1.74	0.3	99.7	0.1	0.59	1.13	0.93	0.90	4.40	9712	1175	10	0	0	42	0	logfile
✔	8A5P	15180	2024-09-26	2022-06-15	3.4	4.19	3.47	3.6	0.011	1.65	3.0	0.10	17.87	0.02	1.816	2.29	0.90	3.3	96.6	0.1	-1.12	0.93	0.90	2.49	3.6	0.003	0.60	0.0	0.04	18.46	0.00	1.986	6.43	1.13	2.8	97.1	0.1	1.78	1.99	0.91	0.87	2.25	13937	1550	10	72	6	0	0	logfile
✔	6V1i	21012	2024-09-25	2019-11-20	3.8	4.10	3.68	3.8	0.007	0.90	0.0	0.04	9.43	0.01	2.433	1.82	0.00	1.5	98.5	0.0	-3.88	0.93	0.89	1.99	3.8	0.003	0.65	0.0	0.04	14.68	0.00	2.451	5.60	2.85	1.5	98.5	0.0	4.80	0.82	0.93	0.89	1.16	9711	1233	9	0	0	0	0	logfile
✔	7YCi	33740	2024-09-24	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.007	0.68	0.0	0.04	24.68	0.00	1.863	22.55	0.00	0.0	0.0	0.0	—	1.23	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	7PME	13530	2024-09-29	2021-09-02	2.9	3.93	2.92	3.1	0.005	0.83	3.0	0.05	15.51	0.01	1.375	4.76	0.08	0.1	99.9	0.0	-1.26	0.93	0.86	3.45	3.1	0.004	0.69	0.0	0.04	15.73	0.00	1.918	5.13	0.40	1.7	98.3	0.0	1.79	0.62	0.94	0.88	2.86	23370	2906	18	0	15	0	0	logfile
✔	7ZT6	14955	2024-09-24	2022-05-09	3.5	4.70	3.59	3.9	0.006	0.71	0.0	0.05	13.21	0.00	2.203	14.00	0.70	3.9	96.1	0.0	0.29	0.93	0.88	2.12	3.9	0.003	0.63	0.0	0.04	14.39	0.00	2.463	8.77	0.70	2.2	97.8	0.0	0.79	0.74	0.93	0.88	1.89	8073	1031	3	0	1	0	0	logfile
✔	7ZPM	14858	2024-09-28	2022-04-27	2.81	3.56	2.81	3.0	0.002	0.49	0.0	0.04	13.14	0.00	1.820	6.91	0.14	3.5	96.4	0.1	-0.23	0.93	0.88	3.42	3.0	0.003	0.69	0.0	0.04	15.18	0.00	2.451	7.27	0.70	3.1	96.9	0.0	0.71	1.06	0.93	0.91	2.99	19330	2412	6	0	0	0	0	logfile
✔	8EFE	28081	2024-09-24	2022-09-08	3.8	4.45	3.82	3.8	0.002	0.52	0.0	0.04	14.48	0.00	1.948	8.30	0.52	3.8	96.2	0.0	1.15	0.93	0.82	1.08	3.8	0.003	0.62	0.0	0.04	16.18	0.00	1.907	8.86	0.91	4.5	95.5	0.0	0.85	0.48	0.93	0.84	1.07	7135	886	3	0	2	0	0	logfile
✔	8YG8	39238	2024-09-25	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.3	0.003	0.68	0.0	0.04	14.40	0.00	2.430	6.12	0.63	8.1	91.9	0.1	-0.66	1.04	0.94	0.88	2.56	11414	1395	8	0	16	0	0	logfile
✔	8G12	29659	2024-09-25	2023-02-01	2.17	3.50	2.16	2.8	0.006	0.87	0.0	0.05	14.96	0.01	2.394	5.72	0.38	4.3	95.7	0.0	-1.26	0.93	0.93	4.11	2.8	0.003	0.56	0.0	0.04	15.35	0.01	2.547	1.97	0.29	3.1	96.9	0.0	0.69	0.31	0.94	0.95	4.93	9980	1336	4	0	0	0	0	logfile
✔	8TPW	41495	2024-09-27	2023-08-05	3.46	4.44	3.53	3.6	0.003	0.50	0.0	0.04	14.06	0.00	2.188	7.30	1.46	4.3	95.6	0.0	1.20	0.93	0.89	1.61	3.6	0.002	0.52	0.0	0.04	14.48	0.00	2.527	4.74	1.51	3.7	96.2	0.0	1.39	0.28	0.93	0.89	1.47	17254	2290	5	0	0	0	0	logfile
✔	8THU	41272	2024-09-26	2023-07-18	3.1	3.86	3.08	3.2	0.004	0.68	0.0	0.04	28.56	0.01	1.528	5.35	0.00	2.2	97.8	0.0	1.40	0.93	0.89	2.77	3.2	0.004	0.56	0.0	0.03	28.38	0.00	2.491	7.27	1.46	2.4	97.6	0.0	2.76	0.27	0.94	0.90	1.98	11902	760	10	291	0	0	0	logfile
✔	8TJU	41311	2024-09-25	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.74	0.01	1.794	24.14	0.00	0.0	0.0	0.0	—	0.40	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8X7i	38099	2024-09-27	2023-11-24	3.27	3.99	3.29	3.0	0.006	0.60	0.0	0.04	25.49	0.00	2.093	11.61	1.85	3.9	96.0	0.1	1.53	0.93	0.87	2.22	3.0	0.003	0.64	0.0	0.04	26.42	0.00	2.101	10.46	2.08	2.8	97.2	0.0	1.77	0.59	0.93	0.88	1.20	14300	1061	14	294	2	0	0	logfile

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