Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YG8	39238	2024-09-25	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.3	0.003	0.68	0.0	0.04	14.40	0.00	2.430	6.12	0.63	8.1	91.9	0.1	-0.66	1.04	0.94	0.88	2.56	11414	1395	8	0	16	0	0	logfile
✔	8HQY	34954	2024-09-27	2022-12-14	3.05	3.63	2.80	2.2	0.011	1.01	0.0	0.06	27.35	0.01	2.238	4.33	0.14	5.8	94.2	0.0	-3.02	0.92	0.86	2.67	2.2	0.004	0.68	0.0	0.04	27.56	0.00	2.082	10.40	1.27	5.0	95.0	0.0	1.44	1.25	0.93	0.88	2.18	12302	848	12	272	0	0	0	logfile
✔	8YEo	39200	2024-09-30	2024-02-22	3.44	4.39	3.47	3.8	0.003	0.60	0.0	0.04	20.20	0.00	2.252	6.90	0.42	5.0	95.0	0.0	-0.97	0.92	0.85	2.26	3.8	0.003	0.61	0.0	0.04	20.07	0.00	2.473	7.75	2.39	5.1	94.9	0.0	-0.06	0.45	0.93	0.90	2.24	24197	2680	12	119	0	0	0	logfile
✔	7PM6	13522	2024-09-29	2021-09-02	3.0	3.43	3.02	2.8	0.012	1.07	4.0	0.06	14.94	0.01	1.724	6.32	0.04	0.4	99.6	0.0	-1.15	0.92	0.83	2.83	2.8	0.004	0.70	0.0	0.04	15.73	0.00	1.942	6.11	0.77	1.8	98.2	0.0	1.67	0.73	0.93	0.88	2.31	23334	2904	18	0	13	0	0	logfile
✔	7PLT	13501	2024-09-25	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	1.0	0.07	14.64	0.01	1.727	4.16	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.002	0.67	0.0	0.04	15.67	0.00	2.089	5.90	1.39	1.1	98.9	0.0	1.67	0.63	0.90	0.87	2.21	10148	1264	6	0	3	0	0	logfile
✔	8GAP	29903	2024-09-29	2023-02-23	3.8	4.94	3.68	3.3	0.002	0.58	0.0	0.04	19.62	0.00	2.199	12.59	0.21	3.7	96.3	0.0	1.14	0.92	0.84	0.38	3.3	0.003	0.60	0.0	0.04	20.00	0.00	2.166	10.80	1.77	3.9	95.9	0.1	1.12	1.44	0.92	0.85	0.52	20630	2032	9	173	1	0	0	logfile
✔	7PMG	13532	2024-09-25	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.18	2.0	0.07	15.70	0.01	1.727	4.64	0.09	0.2	99.8	0.0	-1.37	0.92	0.85	3.45	3.3	0.003	0.65	0.0	0.04	15.63	0.00	1.974	4.89	0.37	1.5	98.5	0.0	1.79	1.67	0.94	0.89	2.77	10189	1264	7	0	6	0	0	logfile
✔	7ZJ5	14741	2024-09-26	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	23.36	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.84	0.0	0.04	25.94	0.01	1.845	54.52	0.00	0.0	0.0	0.0	—	3.94	0.93	0.85	—	12014	0	2	374	1	0	4030	logfile
✔	7BY0	30239	2024-09-26	2020-04-21	4.5	5.50	—	4.5	0.008	0.97	0.0	0.05	31.23	0.01	1.950	11.25	0.15	3.1	96.9	0.0	-3.59	0.92	0.87	—	4.5	0.005	0.73	0.0	0.04	30.73	0.01	2.312	19.14	0.00	5.0	95.0	0.0	0.31	1.28	0.92	0.87	—	12693	868	12	286	0	0	0	logfile
✔	7YQK	34028	2024-09-26	2022-08-07	3.38	4.15	3.41	3.2	0.005	0.66	0.0	0.04	26.06	0.00	2.105	13.31	0.00	4.6	95.3	0.1	-0.71	0.92	0.87	2.04	3.2	0.004	0.71	0.0	0.04	26.88	0.00	2.090	12.39	2.44	4.4	95.6	0.0	0.51	0.50	0.93	0.89	1.36	13745	987	13	290	0	0	0	logfile
✔	7PMi	13535	2024-09-25	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	2.0	0.07	15.80	0.01	1.733	5.04	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.3	0.004	0.68	0.0	0.04	15.60	0.00	1.968	5.88	0.28	1.1	98.9	0.0	1.69	0.66	0.94	0.88	2.57	10189	1264	7	0	6	0	0	logfile
✔	8E14	27823	2024-09-26	2022-08-09	3.36	4.87	3.36	3.5	0.007	1.12	1.0	0.08	24.72	0.01	2.182	16.48	0.41	17.7	82.3	0.0	-2.84	0.92	0.86	0.70	3.5	0.003	0.72	0.0	0.04	24.60	0.00	2.505	11.69	4.34	16.5	83.5	0.0	-2.57	0.35	0.92	0.86	1.06	12442	1161	16	160	2	0	0	logfile
✔	7YCH	33739	2024-09-24	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.68	0.0	0.04	24.23	0.00	1.795	28.44	0.00	0.0	0.0	0.0	—	1.46	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	7oJJ	12953	2024-09-27	2021-05-16	3.5	4.03	3.58	3.5	0.006	0.66	2.0	0.06	13.63	0.00	2.009	9.47	0.12	11.4	88.6	0.0	-3.69	0.92	0.87	2.01	3.5	0.002	0.59	0.0	0.04	14.85	0.00	1.964	5.54	1.05	6.6	93.4	0.0	-0.52	0.98	0.92	0.88	1.70	14330	1785	2	0	2	0	0	logfile
✔	8BLQ	16113	2024-09-25	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.003	0.65	0.0	0.04	14.19	0.00	2.563	14.36	1.56	6.1	93.9	0.0	-1.83	1.43	0.94	0.80	1.25	9210	1220	5	0	0	0	0	logfile
✔	7oE3	12860	2024-09-26	2021-05-01	3.35	4.05	3.43	3.4	0.003	0.52	0.0	0.04	15.39	0.00	2.179	5.99	3.39	8.2	91.8	0.0	-2.02	0.92	0.87	2.22	3.4	0.002	0.59	0.0	0.04	16.18	0.00	2.145	4.40	1.92	6.5	93.5	0.0	0.32	0.43	0.93	0.89	1.51	11904	1478	2	0	2	0	0	logfile
✔	5MMJ	3532	2024-09-25	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	23.41	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.009	0.86	0.0	0.04	23.17	0.01	1.366	19.75	4.56	6.0	93.8	0.1	-0.77	1.59	0.92	0.86	1.13	55315	2806	31	1484	359	0	0	logfile
✔	7ZZ0	15030	2024-09-23	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.53	0.0	0.04	16.82	0.00	2.073	3.28	2.40	1.9	98.1	0.0	1.45	0.22	0.92	0.91	4.56	4387	541	2	0	2	84	0	logfile
✔	6XE9	22145	2024-09-29	2020-06-12	4.3	5.05	4.38	4.4	0.003	0.50	0.0	0.04	14.92	0.00	2.096	21.22	0.77	5.4	94.6	0.0	-1.78	0.92	0.82	—	4.4	0.006	0.74	0.0	0.04	14.77	0.00	2.375	26.59	0.10	6.9	93.1	0.0	-0.02	0.57	0.93	0.83	—	22081	2949	6	0	0	0	0	logfile
✔	8BGU	16036	2024-09-23	2022-10-28	4.1	5.77	3.97	4.0	0.003	0.84	0.0	0.04	23.47	0.00	2.235	4.09	0.00	5.0	95.0	0.0	-2.58	0.92	0.86	—	4.0	0.005	0.72	0.0	0.04	24.07	0.00	2.035	26.40	0.00	12.9	87.1	0.0	-1.37	2.45	0.92	0.88	—	4779	447	5	121	1	0	0	logfile

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