Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NTM	12591	2024-09-25	2021-03-10	2.86	3.19	2.97	2.8	0.013	1.61	7.0	0.10	15.61	0.00	1.962	17.08	1.77	6.2	93.8	0.0	-3.56	0.98	0.97	4.63	2.8	0.004	0.57	0.0	0.05	15.99	0.00	2.041	2.82	0.84	2.3	97.7	0.0	0.01	0.92	0.99	0.98	5.37	10336	1388	8	0	8	0	0	logfile
✔	8CG3	16628	2024-09-23	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.005	0.94	0.0	0.04	16.12	0.00	2.645	0.17	0.00	2.3	97.7	0.0	-4.82	0.29	0.51	0.94	7.55	3040	445	5	0	0	0	0	logfile
✔	8CGH	16643	2024-09-23	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.004	0.86	0.0	0.04	17.20	0.00	2.640	0.97	0.80	6.4	93.6	0.0	-4.90	0.93	0.53	0.93	6.66	2710	400	5	0	0	0	0	logfile
✔	8CGG	16642	2024-09-23	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.002	0.67	0.0	0.04	16.97	0.00	2.666	1.75	0.00	3.1	96.9	0.0	-4.74	0.95	0.51	0.91	7.42	2710	400	5	0	0	0	0	logfile
✔	8G3Q	29708	2024-09-28	2023-02-08	2.3	3.07	2.34	2.8	0.014	1.71	3.0	0.09	18.86	0.01	2.222	0.91	0.21	3.2	96.4	0.4	-0.93	0.86	0.94	6.55	2.9	0.004	0.66	0.0	0.04	13.77	0.00	2.248	6.58	0.72	2.8	97.1	0.2	-0.06	0.94	0.78	0.90	5.45	18618	2266	38	0	96	0	0	logfile
✔	9ERM	19926	2024-09-23	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.002	0.62	0.0	0.05	16.47	0.00	2.640	3.07	1.52	2.5	97.5	0.0	-1.27	0.54	0.43	0.93	6.40	2870	375	5	0	0	0	0	logfile
✔	8G14	29661	2024-09-25	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.49	0.0	0.05	15.68	0.00	2.619	1.21	0.00	3.0	97.0	0.0	0.78	0.19	0.88	0.93	5.29	10020	1336	4	0	0	0	0	logfile
✔	8G3P	29707	2024-09-28	2023-02-08	2.5	3.17	2.55	2.9	0.015	1.64	8.0	0.09	13.93	0.01	2.314	0.38	0.00	3.9	95.7	0.5	-0.75	0.87	0.94	5.97	2.9	0.007	0.75	0.0	0.05	14.22	0.00	2.265	3.72	1.36	3.5	96.3	0.2	-0.42	1.53	0.81	0.90	5.35	20321	2512	40	0	81	0	0	logfile
✔	6VSA	21373	2024-09-25	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.6	0.004	0.58	0.0	0.04	17.32	0.00	2.610	8.13	1.74	0.3	99.7	0.1	0.59	1.13	0.93	0.90	4.40	9712	1175	10	0	0	42	0	logfile
✔	8G3V	29710	2024-09-28	2023-02-08	2.2	2.84	2.21	2.7	0.014	1.61	4.0	0.09	14.34	0.01	2.257	0.54	0.00	3.9	95.8	0.3	-0.74	0.83	0.93	6.59	2.7	0.004	0.65	0.0	0.05	14.98	0.00	2.315	2.81	1.04	2.7	97.1	0.2	-0.04	0.94	0.76	0.90	6.14	20045	2500	28	0	61	0	0	logfile
✔	8QN7	18509	2024-09-23	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.50	0.0	0.05	18.21	0.00	2.686	2.48	0.69	6.7	93.3	0.0	-3.35	1.19	0.43	0.92	6.22	1455	190	5	0	0	0	0	logfile
✔	8oT6	17171	2024-09-23	2023-04-20	2.0	2.14	1.94	2.0	0.007	1.17	0.0	0.07	11.96	0.01	2.631	0.51	1.52	2.7	97.3	0.0	-2.61	0.47	0.93	7.98	1.9	0.003	0.60	0.0	0.05	16.11	0.00	2.567	2.56	0.61	1.4	98.6	0.0	-1.65	2.61	0.46	0.93	7.45	2870	375	5	0	0	0	0	logfile
✔	8G12	29659	2024-09-25	2023-02-01	2.17	3.50	2.16	2.8	0.006	0.87	0.0	0.05	14.96	0.01	2.394	5.72	0.38	4.3	95.7	0.0	-1.26	0.93	0.93	4.11	2.8	0.003	0.56	0.0	0.04	15.35	0.01	2.547	1.97	0.29	3.1	96.9	0.0	0.69	0.31	0.94	0.95	4.93	9980	1336	4	0	0	0	0	logfile
✔	8ToB	41442	2024-09-29	2023-08-03	3.14	3.34	2.61	2.9	0.002	0.45	0.0	0.04	13.68	0.00	2.194	4.63	0.00	3.1	96.9	0.1	0.69	0.78	0.93	4.49	2.9	0.003	0.52	0.0	0.04	15.04	0.00	2.408	3.56	1.52	3.0	97.0	0.0	0.95	0.26	0.79	0.94	4.34	22242	3058	44	0	0	0	0	logfile
✔	8X8o	38151	2024-09-28	2023-11-27	2.5	2.87	2.48	2.7	0.005	0.55	0.0	0.05	14.74	0.00	2.200	2.38	1.64	5.6	94.4	0.0	-1.15	0.82	0.93	5.71	2.7	0.004	0.55	0.0	0.05	14.79	0.00	2.482	1.58	1.53	6.0	94.0	0.0	-0.99	0.18	0.82	0.94	5.65	17682	2325	3	0	0	0	0	logfile
✔	8P5T	17452	2024-09-24	2023-05-24	2.17	2.19	2.21	1.9	0.011	1.21	0.0	0.08	13.97	0.01	2.125	1.04	0.42	3.2	96.8	0.0	-2.13	0.91	0.92	5.21	1.9	0.003	0.57	0.0	0.04	16.47	0.00	1.967	2.11	0.83	2.3	97.7	0.0	1.34	0.41	0.89	0.88	4.22	52590	6714	12	0	18	0	0	logfile
✔	7VYV	32215	2024-09-27	2021-11-15	2.32	2.34	2.29	2.3	0.009	1.10	3.0	0.07	13.12	0.01	2.235	4.68	0.00	5.2	94.7	0.1	-1.40	0.85	0.92	5.76	2.3	0.002	0.56	0.0	0.05	14.56	0.00	2.465	2.75	0.99	4.5	95.4	0.1	-0.88	1.16	0.81	0.91	5.49	16698	2160	3	0	0	0	0	logfile
✔	8Ci1	16665	2024-09-26	2023-02-08	2.8	3.61	2.72	3.2	0.002	0.47	0.0	0.04	9.05	0.00	2.122	16.30	0.70	3.5	96.5	0.0	0.01	0.91	0.92	5.34	3.2	0.004	0.70	0.0	0.05	13.68	0.01	2.450	5.12	0.84	4.5	95.5	0.0	-0.25	0.99	0.87	0.91	4.95	13595	1660	20	0	25	0	0	logfile
✔	8G40	29712	2024-09-28	2023-02-08	2.8	3.23	2.72	3.1	0.015	1.66	2.0	0.09	17.44	0.01	2.196	0.58	0.42	4.4	95.3	0.3	-0.75	0.82	0.92	5.82	3.1	0.008	0.88	2.0	0.05	14.27	0.01	2.195	5.75	1.76	3.7	96.0	0.2	-0.36	0.45	0.78	0.90	4.11	18650	2263	38	0	97	0	0	logfile
✔	8EVU	28637	2024-09-26	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.10	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.004	0.57	0.0	0.04	13.49	0.00	1.117	3.62	0.72	2.2	97.8	0.0	1.36	0.42	0.76	0.91	3.95	11902	1540	9	0	5	0	0	logfile

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