Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AZS	15770	2024-09-24	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.2	0.028	4.05	31.0	0.17	24.42	0.02	2.053	345.81	15.67	48.7	44.4	6.9	-8.17	17.49	0.18	0.16	-0.10	9036	1224	36	0	0	0	0	logfile
✔	1oED	1044	2024-09-23	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.1	0.004	1.04	0.0	0.05	16.17	0.01	2.570	21.32	2.25	2.1	97.9	0.0	1.35	2.68	0.61	0.40	—	4926	636	5	0	0	0	0	logfile
✔	6TA3	10421	2024-09-25	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.96	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.89	0.0	0.05	18.13	0.01	1.577	25.33	3.79	3.5	96.5	0.0	-0.26	2.45	0.78	0.73	0.35	9491	1201	6	0	5	0	0	logfile
✔	3KTT	5148	2024-09-23	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.16	0.0	0.05	17.38	0.01	2.322	25.05	3.91	9.2	89.8	1.0	-2.48	1.77	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	5VC7	8658	2024-09-29	2017-03-31	3.9	4.38	—	4.3	0.007	1.50	0.0	0.07	12.73	0.01	1.173	117.97	7.14	1.5	98.2	0.4	-1.98	0.77	0.72	1.21	4.3	0.004	0.87	0.0	0.05	15.69	0.01	2.394	15.48	4.29	2.6	97.4	0.0	-0.67	0.99	0.79	0.81	0.32	23298	3264	12	0	12	0	0	logfile
✔	3J2P	5499	2024-09-25	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.50	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.87	0.0	0.04	17.83	0.00	2.200	68.15	9.85	17.9	78.3	3.7	-4.25	0.86	0.38	0.72	0.97	9890	1134	8	0	6	0	1086	logfile
✔	7CR4	30447	2024-09-27	2020-08-12	3.9	4.24	—	3.9	0.008	0.65	0.0	0.04	13.14	0.00	1.833	102.74	0.00	4.6	95.4	0.0	-2.89	0.59	0.76	0.53	3.9	0.004	0.91	0.0	0.04	16.49	0.00	2.448	19.65	2.68	3.0	97.0	0.0	0.87	1.74	0.57	0.77	0.45	15988	1968	12	0	4	0	0	logfile
✔	5ND1	3619	2024-09-27	2017-03-07	3.7	3.86	—	3.9	0.017	2.27	54.0	0.15	22.44	0.01	0.204	100.40	32.66	7.8	89.7	2.5	-2.95	0.47	0.82	1.08	3.9	0.003	0.82	0.0	0.04	18.49	0.00	2.418	11.54	6.93	8.6	90.9	0.5	-1.97	0.83	0.48	0.83	0.95	14963	1977	2	0	0	0	0	logfile
✔	8UPT	42455	2024-09-23	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	5LY6	4118	2024-09-23	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.005	0.87	0.0	0.04	13.99	0.01	2.505	17.30	0.00	11.3	88.5	0.2	-2.96	3.31	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	5Li4	4052	2024-09-28	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	14.11	0.01	2.275	24.65	0.00	15.2	83.7	1.1	-3.90	4.20	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7CR7	30448	2024-09-27	2020-08-12	3.7	3.92	—	3.8	0.008	0.79	0.0	0.04	14.63	0.00	1.825	92.66	0.00	5.6	94.2	0.2	-3.89	0.64	0.69	0.59	3.8	0.004	0.90	0.0	0.04	18.00	0.00	2.411	17.15	1.65	4.4	95.6	0.0	0.13	2.11	0.62	0.68	0.32	16136	1988	12	0	4	0	0	logfile
✔	5W65	8775	2024-09-23	2017-06-16	4.3	4.07	—	3.9	0.009	1.65	79.0	0.10	14.85	0.01	1.089	88.79	4.61	8.9	86.3	4.8	-3.52	0.74	0.65	—	3.9	0.004	0.88	0.0	0.05	15.33	0.01	2.248	16.29	0.00	7.7	91.5	0.8	-0.85	3.84	0.83	0.79	—	47308	5599	26	105	60	0	0	logfile
✔	8UPY	42457	2024-09-23	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.49	0.01	2.036	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	3LoS	5137	2024-09-26	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.20	0.0	0.05	15.74	0.01	2.369	22.62	0.00	19.4	77.4	3.2	-4.64	1.35	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	3J5R	5777	2024-09-27	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.004	0.93	0.0	0.04	13.10	0.01	2.267	20.44	0.00	6.6	93.1	0.3	0.01	1.78	0.67	0.52	—	17564	2324	8	0	44	0	0	logfile
✔	6BZE	7314	2024-09-26	2017-12-23	4.0	4.03	—	4.0	0.009	1.42	0.0	0.08	17.34	0.01	1.648	79.81	9.00	13.2	86.4	0.4	-5.34	0.37	0.48	—	4.0	0.004	1.07	0.0	0.05	19.33	0.01	2.440	24.67	5.38	10.5	89.4	0.1	-1.91	2.77	0.51	0.72	—	7072	848	8	0	0	0	0	logfile
✔	7DA4	30622	2024-09-23	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.99	0.0	0.04	12.17	0.00	2.587	20.20	0.00	26.7	73.3	0.0	-6.05	3.09	0.41	0.64	—	507	66	3	0	0	0	0	logfile
✔	3J06	5185	2024-09-26	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.60	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.3	0.004	0.89	1.0	0.04	20.14	0.01	2.278	13.90	4.74	7.2	91.2	1.6	-2.59	1.24	0.55	0.78	2.12	62916	7595	98	147	0	0	0	logfile
✔	3J5P	5778	2024-09-28	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.3	0.003	0.87	0.0	0.04	17.44	0.00	2.476	13.62	3.55	5.4	94.6	0.0	0.31	1.15	0.73	0.79	0.54	18636	2324	8	0	44	0	0	logfile

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