Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5Y4o	6805	2024-09-26	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.003	0.78	0.0	0.04	17.51	0.00	2.088	9.81	4.84	6.7	92.6	0.7	-0.40	1.75	0.58	0.73	1.02	12341	1561	7	0	0	0	0	logfile
✔	3JD8	6640	2024-09-25	2016-05-01	4.43	4.58	—	4.4	0.015	1.56	5.0	0.13	18.26	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.97	0.0	0.05	12.37	0.00	2.444	15.67	0.00	9.3	89.8	0.9	-1.25	1.25	0.57	0.73	—	8050	1133	7	0	25	0	0	logfile
✔	7AKV	11814	2024-09-24	2020-10-02	3.6	3.04	3.41	3.7	0.004	0.65	0.0	0.04	14.25	0.00	2.005	76.42	0.16	17.7	82.2	0.1	-4.19	0.81	0.82	2.44	3.7	0.003	0.56	0.0	0.04	16.28	0.00	2.270	66.33	2.02	12.5	87.4	0.1	-3.10	0.33	0.81	0.82	1.88	6201	799	2	0	0	0	245	logfile
✔	3J8i	6179	2024-09-27	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.17	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.90	0.0	0.04	14.22	0.01	2.124	12.48	0.00	12.3	87.1	0.5	-2.02	1.41	0.65	0.71	—	14800	1875	10	0	10	0	0	logfile
✔	6i1Y	0327	2024-09-25	2018-10-30	3.4	3.52	—	3.4	0.015	2.01	16.0	0.10	13.31	0.02	1.301	75.63	0.72	10.9	85.8	3.3	-5.20	0.79	0.83	1.55	3.4	0.004	0.73	0.0	0.05	16.15	0.01	2.410	13.18	2.74	7.1	92.7	0.2	-1.93	1.89	0.78	0.79	1.77	56520	7440	15	0	0	0	0	logfile
✔	6XJA	22204	2024-09-27	2020-06-23	4.0	4.11	—	3.7	0.023	1.93	31.0	0.12	18.04	0.01	0.468	73.73	18.43	6.1	92.2	1.7	-1.93	0.69	0.54	—	3.8	0.003	0.81	0.0	0.04	17.21	0.01	2.261	18.34	4.08	7.9	92.0	0.1	-2.32	1.96	0.75	0.67	—	16441	2156	5	0	0	0	0	logfile
✔	5J8V	8073	2024-09-29	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.004	0.98	0.0	0.04	9.14	0.00	2.297	6.53	0.32	12.7	85.8	1.5	-1.03	0.82	0.75	0.75	—	73616	13812	4	0	0	0	0	logfile
✔	5W66	8776	2024-09-23	2017-06-16	3.9	4.50	—	4.1	0.010	1.62	55.0	0.09	14.97	0.01	1.010	70.90	4.84	8.5	87.3	4.2	-3.36	0.67	0.53	0.71	4.1	0.004	0.98	0.0	0.05	17.71	0.01	2.006	19.63	3.17	7.0	92.3	0.7	-0.96	1.74	0.87	0.80	0.74	48857	5795	25	105	59	0	0	logfile
✔	3JBT	6480	2024-09-28	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.73	0.01	1.894	70.66	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.004	0.85	0.0	0.04	17.35	0.00	1.839	14.24	2.84	7.6	91.8	0.6	-1.57	1.78	0.70	0.69	0.68	70252	8736	28	0	21	0	0	logfile
✔	6LBA	0868	2024-09-27	2019-11-13	4.1	4.19	—	4.1	0.005	1.04	8.0	0.06	14.23	0.01	1.605	70.19	3.56	10.9	88.6	0.5	-2.46	0.76	0.78	—	4.1	0.003	0.76	0.0	0.04	14.70	0.00	2.420	12.30	0.00	7.2	92.8	0.0	0.13	1.65	0.77	0.79	—	14992	1864	4	0	0	0	0	logfile
✔	5WVE	6690	2024-09-30	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.50	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.003	0.83	0.0	0.04	13.68	0.00	1.841	18.85	0.00	7.2	92.2	0.6	-1.71	2.03	0.79	0.59	—	78605	9766	39	0	21	0	0	logfile
✔	6FTX	4318	2024-09-29	2018-02-25	4.5	5.25	—	4.4	0.020	2.39	14.0	0.12	26.06	0.04	1.732	68.74	3.23	8.1	90.3	1.6	-2.94	0.82	0.74	—	4.4	0.003	0.72	0.0	0.04	24.17	0.00	1.522	12.98	0.00	4.1	95.8	0.2	-0.28	1.06	0.82	0.74	—	21049	1808	14	319	2	0	0	logfile
✔	7NXD	12637	2024-09-26	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.51	0.0	0.11	14.13	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.003	0.78	0.0	0.05	11.37	0.00	1.850	20.00	0.00	5.6	94.4	0.0	-1.06	1.90	0.89	0.73	—	12805	1595	18	0	48	0	0	logfile
✔	6W5U	21548	2024-09-27	2020-03-13	3.9	3.97	—	3.9	0.011	1.52	4.0	0.16	20.44	0.01	1.741	63.51	6.82	8.5	90.5	1.0	-2.76	0.61	0.76	1.73	3.9	0.004	0.89	0.0	0.05	16.85	0.00	2.435	12.23	4.15	7.0	92.9	0.1	-0.43	1.74	0.62	0.78	1.34	9474	1175	6	0	21	0	0	logfile
✔	8BH7	16049	2024-09-24	2022-10-30	4.23	9.20	—	4.5	0.005	0.83	0.0	0.07	25.73	0.01	2.136	63.21	0.43	7.8	92.2	0.0	-3.39	0.91	0.80	—	4.5	0.007	0.96	0.0	0.05	25.72	0.01	1.887	65.22	0.05	13.0	87.0	0.0	-3.01	1.33	0.92	0.82	—	52615	2464	21	1541	0	0	0	logfile
✔	6W5V	21549	2024-09-27	2020-03-13	4.0	4.11	—	4.0	0.008	1.37	4.0	0.18	19.78	0.01	1.979	62.54	9.99	7.0	92.3	0.7	-2.21	0.63	0.75	—	4.0	0.004	0.87	0.0	0.05	16.38	0.00	2.261	13.74	3.77	6.9	93.1	0.0	-0.36	0.84	0.64	0.78	—	10586	1307	9	0	24	0	0	logfile
✔	6L54	0837	2024-09-29	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	61.71	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.003	0.64	0.0	0.04	13.84	0.00	1.875	65.24	3.01	11.7	88.3	0.0	-1.28	0.75	0.80	0.78	1.80	20387	2608	4	0	2	0	857	logfile
✔	7CZ6	30507	2024-09-23	2020-09-07	4.1	4.04	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	61.25	0.00	8.1	91.9	0.0	-1.66	0.68	0.64	—	4.1	0.004	0.83	0.0	0.05	11.31	0.01	2.353	11.27	0.19	5.8	94.2	0.0	-1.88	0.91	0.66	0.74	—	4535	630	5	0	0	0	0	logfile
✔	7R4R	14315	2024-09-24	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.32	18.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.005	1.43	17.0	0.24	16.32	0.00	1.805	22.48	5.22	8.9	91.1	0.1	-2.49	1.29	0.67	0.59	-0.26	50505	3293	12	0	43	0	24171	logfile
✔	6J8H	9781	2024-09-26	2019-01-19	3.2	3.35	—	3.3	0.010	1.54	1.0	0.10	21.72	0.01	1.886	58.60	27.17	2.0	96.6	1.3	2.87	0.60	0.78	1.53	3.3	0.004	0.72	0.0	0.04	18.46	0.00	2.361	6.42	5.59	4.2	95.6	0.3	1.23	1.36	0.60	0.84	1.62	11763	1433	8	0	12	0	0	logfile

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