Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TTS	26122	2024-09-28	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.67	0.0	0.04	14.03	0.00	1.769	16.72	0.12	3.4	96.5	0.1	2.42	1.03	0.69	0.41	-0.43	18793	2686	12	0	23	0	0	logfile
✔	8D6X	27225	2024-09-28	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.004	0.73	0.0	0.05	14.96	0.00	2.367	26.07	1.82	5.1	94.9	0.0	-0.27	4.66	0.82	0.62	0.13	68362	8957	41	0	0	0	0	logfile
✔	7PTL	13630	2024-09-29	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	23.55	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	27.87	0.01	1.723	77.38	0.00	0.0	0.0	0.0	—	3.53	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	8E5P	27917	2024-09-28	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.51	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.002	0.66	0.0	0.04	12.32	0.00	1.507	11.63	0.00	2.2	97.8	0.0	1.02	1.57	0.86	0.78	—	20038	2502	13	8	18	0	0	logfile
✔	8W4F	36904	2024-09-26	2023-08-24	4.2	9.65	3.95	8.2	0.026	2.68	41.0	0.12	11.76	0.01	2.158	1.62	0.12	6.5	92.3	1.2	-1.80	0.86	0.56	—	4.0	0.003	0.73	0.0	0.04	12.80	0.00	2.214	12.36	0.00	10.4	89.2	0.4	-2.50	1.11	0.91	0.72	—	60429	3951	6	0	0	0	29841	logfile
✔	8BH7	16049	2024-09-24	2022-10-30	4.23	9.20	—	4.5	0.005	0.83	0.0	0.07	25.73	0.01	2.136	63.21	0.43	7.8	92.2	0.0	-3.39	0.91	0.80	—	4.5	0.007	0.96	0.0	0.05	25.72	0.01	1.887	65.22	0.05	13.0	87.0	0.0	-3.01	1.33	0.92	0.82	—	52615	2464	21	1541	0	0	0	logfile
✔	7ELD	31181	2024-09-25	2021-04-09	4.6	9.12	—	7.4	0.012	1.41	6.0	0.11	20.42	0.00	2.446	8.52	10.68	2.9	96.2	0.9	3.37	0.79	0.50	—	7.1	0.003	0.71	0.0	0.04	19.07	0.00	2.179	21.11	0.00	5.5	94.1	0.5	0.03	1.45	0.89	0.77	—	11282	1137	2	109	0	0	0	logfile
✔	8KG9	37215	2024-09-27	2023-08-17	4.52	8.93	5.25	4.5	0.004	0.77	0.0	0.05	14.79	0.00	1.015	36.87	0.74	6.0	93.8	0.3	-0.28	0.88	0.79	—	4.5	0.003	0.72	0.0	0.04	14.98	0.00	1.877	21.86	0.00	5.7	94.1	0.1	-0.38	1.12	0.88	0.76	—	63507	7910	25	23	15	0	0	logfile
✔	8E5L	27914	2024-09-28	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.89	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.003	0.71	0.0	0.04	12.53	0.00	0.980	15.84	0.00	3.3	96.7	0.0	0.48	1.31	0.88	0.82	—	20058	2502	13	9	18	0	0	logfile
✔	7T20	25607	2024-09-29	2021-12-02	4.7	8.85	—	7.6	0.004	0.63	0.0	0.04	12.59	0.00	2.079	7.50	3.24	2.3	97.6	0.2	0.68	0.91	0.76	—	7.4	0.003	0.63	0.0	0.04	11.88	0.00	1.883	17.72	0.00	3.8	96.2	0.0	1.02	1.62	0.92	0.76	—	21106	2661	11	10	8	0	0	logfile
✔	7ELE	31182	2024-09-25	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	21.73	0.01	2.210	17.86	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.5	0.003	0.75	0.0	0.04	18.77	0.00	2.130	20.07	0.00	8.2	91.6	0.2	-1.75	1.31	0.88	0.76	—	10733	1137	2	83	0	0	0	logfile
✔	7UY8	26867	2024-09-25	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.003	0.66	0.0	0.04	14.49	0.00	2.424	11.61	0.00	4.9	95.1	0.0	-0.37	1.40	0.92	0.84	—	9552	1161	5	0	1	0	0	logfile
✔	7W0F	32241	2024-09-26	2021-11-18	4.55	8.43	—	7.5	0.003	0.64	1.0	0.04	17.27	0.00	1.356	21.15	1.19	4.4	94.7	0.8	-0.94	0.71	0.38	—	7.3	0.003	0.67	0.0	0.04	17.21	0.00	2.389	16.28	0.00	5.1	94.8	0.1	-0.62	1.46	0.85	0.69	—	14097	1492	6	94	0	0	0	logfile
✔	8oSL	17160	2024-09-26	2023-04-19	4.9	8.34	6.27	6.8	0.005	0.80	0.0	0.05	28.01	0.00	2.363	2.30	0.00	1.1	98.9	0.0	-0.07	0.81	0.71	—	6.9	0.007	0.78	0.0	0.04	35.40	0.01	2.259	99.58	0.00	10.5	89.5	0.0	-0.63	3.47	0.87	0.82	—	13541	1441	14	294	0	0	301	logfile
✔	7T3L	25662	2024-09-24	2021-12-08	3.6	8.29	—	3.5	0.004	0.74	0.0	0.05	18.09	0.01	2.223	7.57	0.52	5.0	95.0	0.0	-1.92	0.73	0.45	-0.03	3.4	0.002	0.61	0.0	0.04	18.34	0.00	2.448	14.47	0.95	5.1	94.9	0.0	0.23	1.17	0.94	0.84	-0.02	52219	6242	28	200	0	0	0	logfile
✔	6MDM	9100	2024-09-29	2018-09-04	4.4	8.28	—	4.2	0.013	1.55	1.0	0.09	12.23	0.01	1.944	4.73	0.10	3.9	95.8	0.3	-3.62	0.88	0.72	—	4.2	0.005	0.71	0.0	0.06	12.57	0.00	2.198	16.85	0.03	8.2	91.8	0.0	-1.92	0.81	0.94	0.85	—	73171	4651	17	0	11	0	36604	logfile
✔	6XMG	22258	2024-09-24	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	21.64	0.00	2.187	10.77	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.4	0.004	0.74	0.0	0.04	22.79	0.01	2.016	31.79	0.20	10.2	89.8	0.0	-2.00	0.73	0.90	0.77	—	8361	638	4	154	1	0	0	logfile
✔	6ZY7	11553	2024-09-28	2020-07-30	4.64	8.26	4.84	4.6	0.009	1.01	0.0	0.08	12.60	0.01	2.218	6.54	0.00	1.7	98.3	0.0	-1.71	0.93	0.83	—	4.6	0.004	0.65	0.0	0.04	14.12	0.00	2.395	16.51	0.00	3.4	96.6	0.0	-0.68	2.30	0.92	0.72	—	19979	2319	10	60	4	0	0	logfile
✔	7NXD	12637	2024-09-26	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.51	0.0	0.11	14.13	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.003	0.78	0.0	0.05	11.37	0.00	1.850	20.00	0.00	5.6	94.4	0.0	-1.06	1.90	0.89	0.73	—	12805	1595	18	0	48	0	0	logfile
✔	6XoW	22282	2024-09-24	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.39	0.01	1.991	24.14	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.004	0.77	0.0	0.04	13.33	0.01	2.446	22.13	0.23	4.1	95.9	0.0	-0.08	0.82	0.91	0.82	—	7711	966	1	0	0	0	0	logfile

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