Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HHC	34760	2024-09-30	2022-11-16	3.3	3.40	3.29	3.3	0.005	0.65	0.0	0.05	13.66	0.00	1.776	5.46	0.04	2.9	97.1	0.0	0.83	0.82	0.88	3.74	3.3	0.004	0.55	0.0	0.04	14.84	0.00	1.885	4.48	1.13	2.7	97.3	0.0	0.97	0.25	0.82	0.89	2.89	24249	3129	12	0	11	0	0	logfile
✔	7ZTC	14957	2024-09-30	2022-05-09	3.9	3.69	3.89	3.8	0.004	0.84	0.0	0.05	13.85	0.01	2.123	5.33	0.00	6.9	93.1	0.0	-2.20	0.71	0.82	3.21	3.8	0.004	0.75	0.0	0.04	15.65	0.00	2.416	6.48	1.90	4.9	95.1	0.0	-0.16	2.51	0.72	0.84	2.37	25652	2920	20	0	548	0	0	logfile
✔	8HH9	34756	2024-09-30	2022-11-16	3.6	3.44	3.55	3.4	0.004	0.67	0.0	0.05	13.99	0.00	1.830	6.96	0.19	2.9	97.0	0.1	0.73	0.82	0.87	2.86	3.4	0.004	0.59	0.0	0.04	15.38	0.00	1.922	5.24	2.14	3.5	96.5	0.0	0.62	0.30	0.83	0.87	2.14	24250	3129	13	0	12	0	0	logfile
✔	8HH1	34748	2024-09-30	2022-11-16	2.9	3.08	2.86	3.0	0.004	0.66	4.0	0.05	14.40	0.00	1.081	4.29	1.01	1.7	98.3	0.0	1.35	0.81	0.90	3.97	3.0	0.002	0.52	0.0	0.04	15.97	0.00	1.961	4.18	1.13	1.9	98.1	0.0	1.28	0.44	0.82	0.92	3.30	24280	3129	13	0	12	0	0	logfile
✔	5o4U	3746	2024-09-30	2017-05-31	4.2	4.27	4.23	4.3	0.007	1.26	2.0	0.08	11.28	0.01	0.586	15.82	1.75	17.3	82.7	0.0	-4.67	0.39	0.70	—	4.2	0.004	0.83	0.0	0.06	12.66	0.01	2.407	15.62	0.00	16.3	83.7	0.0	-3.19	0.70	0.45	0.75	—	24528	3312	16	0	0	0	0	logfile
✔	7UTJ	26772	2024-09-30	2022-04-27	2.77	3.05	2.85	3.1	0.009	0.91	0.0	0.06	16.79	0.01	1.927	7.51	3.88	3.1	96.9	0.0	0.03	0.67	0.85	3.76	3.0	0.005	0.64	0.0	0.04	17.87	0.00	1.943	6.27	1.51	2.5	97.5	0.0	1.65	1.17	0.63	0.85	3.13	24591	3156	24	0	12	21	0	logfile
✔	8HHA	34757	2024-09-30	2022-11-16	3.4	3.24	3.42	3.4	0.003	0.60	0.0	0.04	14.06	0.00	1.970	6.08	0.00	3.0	96.9	0.0	0.84	0.78	0.87	3.10	3.4	0.003	0.56	0.0	0.04	15.47	0.00	1.879	5.36	1.17	3.2	96.8	0.0	0.95	0.30	0.79	0.88	2.62	24245	3129	12	0	11	0	0	logfile
✔	8HH2	34749	2024-09-30	2022-11-16	3.0	3.10	3.07	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.79	0.89	3.34	3.1	0.002	0.54	0.0	0.04	15.72	0.00	1.960	4.10	1.71	2.1	97.9	0.0	1.09	0.38	0.80	0.91	3.06	24281	3129	13	0	13	0	0	logfile
✔	8HHB	34758	2024-09-30	2022-11-16	3.5	3.08	3.37	3.3	0.004	0.63	0.0	0.05	14.33	0.00	1.908	5.81	0.00	2.9	97.1	0.0	0.99	0.78	0.87	3.11	3.3	0.003	0.55	0.0	0.04	15.61	0.00	1.872	4.23	1.29	3.0	97.0	0.0	1.21	0.92	0.78	0.87	2.73	24245	3129	12	0	11	0	0	logfile
✔	8HH3	34750	2024-09-30	2022-11-16	4.3	3.10	3.07	3.1	0.004	0.64	3.0	0.05	14.21	0.00	1.690	4.12	0.51	2.1	97.9	0.1	0.96	0.73	0.80	—	3.1	0.005	0.60	0.0	0.05	14.53	0.00	1.904	4.64	0.04	2.6	97.3	0.1	0.90	0.37	0.75	0.81	—	24281	3129	13	0	13	0	0	logfile
✔	5Z1L	6876	2024-09-30	2017-12-26	4.0	3.76	—	4.0	0.004	0.99	0.0	0.07	9.07	0.01	2.380	2.79	0.65	12.5	87.5	0.0	-4.25	0.53	0.79	—	4.0	0.006	0.86	0.0	0.06	14.95	0.00	2.298	6.99	5.34	17.9	82.0	0.0	-2.98	0.64	0.55	0.81	—	25560	3582	18	0	0	0	0	logfile
✔	6WVT	21925	2024-09-30	2020-05-06	3.56	3.74	—	3.7	0.007	0.97	0.0	0.05	17.68	0.01	2.106	6.53	5.29	3.8	96.2	0.0	-3.51	0.73	0.83	2.21	3.7	0.004	0.70	0.0	0.04	17.85	0.00	1.971	8.67	3.82	3.3	96.7	0.0	0.41	0.53	0.73	0.84	2.06	25248	3240	18	0	12	0	0	logfile
✔	7TCo	25815	2024-09-30	2021-12-27	4.19	4.96	—	4.3	0.005	1.06	0.0	0.06	18.06	0.01	2.228	2.57	0.00	6.4	93.5	0.1	-1.29	0.86	0.82	—	4.3	0.003	0.68	0.0	0.05	13.52	0.00	2.483	7.82	0.00	7.4	92.6	0.0	-0.57	0.54	0.86	0.84	—	23973	2979	27	0	57	0	0	logfile
✔	8DP1	27628	2024-09-30	2022-07-14	3.46	4.08	3.46	3.5	0.014	1.85	9.0	0.12	15.88	0.02	2.519	0.08	1.61	4.4	95.0	0.6	-0.92	0.84	0.83	3.01	3.5	0.002	0.62	0.0	0.04	14.07	0.00	2.451	4.44	0.30	2.3	97.7	0.0	0.20	1.26	0.85	0.86	2.21	25000	3045	33	0	95	0	0	logfile
✔	6D03	7783	2024-09-30	2018-04-10	3.68	3.89	—	3.8	0.009	1.19	2.0	0.07	13.13	0.01	1.960	4.27	1.12	5.3	94.6	0.1	-3.65	0.85	0.85	3.19	3.8	0.003	0.62	0.0	0.06	14.42	0.00	2.005	5.70	1.86	3.7	96.3	0.0	0.47	2.01	0.85	0.85	1.79	24844	3106	15	0	26	0	0	logfile
✔	7UUW	26805	2024-09-30	2022-04-29	3.36	3.61	3.51	3.6	0.007	0.75	0.0	0.05	17.00	0.00	2.202	7.09	1.34	3.1	96.9	0.0	-0.17	0.67	0.86	3.53	3.6	0.003	0.55	0.0	0.04	16.58	0.00	2.235	4.90	0.89	1.8	98.2	0.0	1.38	0.33	0.65	0.86	3.15	24852	3174	18	0	12	0	0	logfile
✔	8ioT	35623	2024-09-30	2023-03-13	2.51	3.17	2.56	3.0	0.003	0.57	0.0	0.05	11.07	0.00	2.169	5.18	0.00	5.3	94.7	0.0	0.21	0.83	0.84	2.64	3.0	0.003	0.56	0.0	0.05	13.18	0.00	2.440	3.49	1.19	3.7	96.3	0.0	0.39	0.51	0.80	0.83	2.73	24642	3063	12	0	48	0	0	logfile
✔	8DoW	27624	2024-09-30	2022-07-14	3.69	4.37	3.72	3.7	0.014	1.91	15.0	0.13	15.27	0.02	2.498	0.14	1.03	7.6	91.0	1.3	-1.25	0.84	0.82	2.02	3.6	0.004	0.70	0.0	0.04	14.40	0.00	2.467	6.75	0.92	5.7	94.0	0.3	-0.31	1.21	0.84	0.83	1.84	25053	3108	31	0	69	0	0	logfile
✔	7YBJ	33723	2024-09-30	2022-06-29	3.73	3.85	3.73	3.8	0.003	0.67	0.0	0.04	13.01	0.00	2.110	9.11	0.00	4.3	95.7	0.0	-0.43	0.74	0.76	1.78	3.8	0.005	0.67	0.0	0.05	15.14	0.00	2.489	9.92	1.74	5.3	94.7	0.0	-0.23	0.53	0.74	0.76	1.70	25719	3282	3	0	0	0	0	logfile
✔	8H67	34495	2024-09-30	2022-10-15	3.8	4.68	3.97	4.0	0.003	0.68	0.0	0.04	16.40	0.00	1.834	19.90	0.08	9.6	90.1	0.2	-2.58	0.87	0.77	0.61	4.1	0.003	0.74	1.0	0.04	17.87	0.00	2.342	11.04	1.99	10.2	89.6	0.2	-2.35	1.43	0.88	0.80	0.54	25622	3050	15	58	0	0	0	logfile

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