Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DJM	27461	2024-09-24	2022-07-01	3.23	3.66	3.31	3.6	0.029	1.53	2.0	1.04	32.65	0.00	1.844	8.23	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	3.7	0.003	1.37	0.0	0.14	21.03	0.00	2.597	4.61	1.37	2.4	97.6	0.0	1.55	0.94	0.60	0.83	2.40	7032	862	7	0	8	0	0	logfile
✔	6T7D	10394	2024-09-24	2019-10-21	4.4	4.45	4.29	4.1	0.005	0.86	0.0	0.05	32.58	0.01	2.107	2.55	0.00	2.0	98.0	0.0	-2.34	0.86	0.77	—	4.1	0.006	0.74	0.0	0.04	32.42	0.00	2.070	16.05	0.00	5.4	94.6	0.0	1.56	0.79	0.87	0.83	—	8209	853	11	234	0	0	0	logfile
✔	8DJK	27460	2024-09-24	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	32.03	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	3.7	0.003	1.34	0.0	0.14	20.85	0.00	2.532	4.92	2.04	3.4	96.6	0.0	1.38	0.51	0.60	0.82	2.27	7091	870	7	0	8	0	0	logfile
✔	7Uo1	26637	2024-09-27	2022-04-12	3.2	3.31	—	3.3	0.002	4.43	0.0	0.10	31.57	0.00	1.799	11.73	0.00	4.5	92.7	2.7	0.03	0.51	0.54	2.38	3.2	0.004	1.86	0.0	0.24	31.18	0.01	2.029	15.50	4.08	5.5	94.5	0.0	-0.22	1.81	0.57	0.65	1.50	16588	112	4	455	10	0	5894	logfile
✔	7Uo5	26640	2024-09-26	2022-04-12	3.1	3.62	3.02	3.0	0.015	2.22	0.0	0.12	31.48	0.06	2.328	2.33	1.02	6.4	92.7	0.9	-2.73	0.80	0.60	3.19	3.0	0.005	0.82	0.0	0.05	30.18	0.01	1.974	20.55	2.04	9.1	90.0	0.9	-3.47	1.98	0.81	0.66	1.42	13979	112	3	373	7	0	5024	logfile
✔	6M4D	30076	2024-09-25	2020-03-06	4.4	4.58	—	4.3	0.007	0.84	0.0	0.05	31.37	0.01	2.074	25.84	0.71	6.6	92.8	0.6	-2.81	0.88	0.82	—	4.3	0.004	0.70	0.0	0.04	30.41	0.01	2.121	17.44	0.00	2.6	96.8	0.6	0.53	1.43	0.88	0.82	—	10497	682	10	250	0	0	0	logfile
✔	8EUE	28612	2024-09-26	2022-10-18	3.48	4.06	3.85	3.7	0.007	1.33	0.0	0.06	31.23	0.01	2.242	6.41	0.00	3.8	96.2	0.0	-2.48	0.78	0.80	0.90	3.7	0.004	0.97	0.0	0.04	30.25	0.01	2.311	18.25	5.07	4.1	95.9	0.0	0.78	0.44	0.78	0.80	0.72	11926	751	10	294	0	0	0	logfile
✔	7BY0	30239	2024-09-26	2020-04-21	4.5	5.50	—	4.5	0.008	0.97	0.0	0.05	31.23	0.01	1.950	11.25	0.15	3.1	96.9	0.0	-3.59	0.92	0.87	—	4.5	0.005	0.73	0.0	0.04	30.73	0.01	2.312	19.14	0.00	5.0	95.0	0.0	0.31	1.28	0.92	0.87	—	12693	868	12	286	0	0	0	logfile
✔	8EUJ	28614	2024-09-26	2022-10-18	3.36	4.07	3.84	3.7	0.006	1.22	0.0	0.06	30.77	0.01	2.233	5.43	0.00	2.6	97.4	0.0	-2.60	0.71	0.76	0.82	3.7	0.004	0.82	0.0	0.04	29.89	0.01	2.322	17.37	5.05	3.4	96.6	0.0	0.36	1.32	0.71	0.78	0.56	11913	747	10	294	0	0	0	logfile
✔	7V96	31810	2024-09-29	2021-08-24	3.92	4.00	3.84	4.0	0.011	1.59	35.0	0.11	30.75	0.01	1.891	6.46	15.66	4.7	94.5	0.8	-1.38	0.71	0.74	1.81	4.0	0.004	0.62	0.0	0.03	28.63	0.00	2.375	9.12	2.94	4.6	95.3	0.1	-0.85	0.85	0.75	0.81	1.22	23968	1593	18	550	0	0	0	logfile
✔	8UPT	42455	2024-09-23	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	7PFV	13381	2024-09-27	2021-08-12	4.4	7.43	—	4.1	0.006	0.86	0.0	0.05	30.43	0.01	2.249	7.20	0.00	1.2	98.8	0.0	0.36	0.91	0.85	—	4.1	0.005	0.66	0.0	0.04	29.78	0.00	2.322	17.09	0.00	2.9	97.1	0.0	1.63	0.66	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7PFF	13374	2024-09-27	2021-08-11	4.3	7.61	—	3.8	0.006	0.92	0.0	0.05	30.35	0.01	2.286	8.26	0.00	1.6	98.4	0.0	-0.07	0.90	0.79	—	3.7	0.006	0.76	0.0	0.04	31.11	0.01	2.327	26.21	0.00	4.0	96.0	0.0	0.34	1.87	0.90	0.82	—	12935	768	10	334	0	0	0	logfile
✔	7PFX	13383	2024-09-27	2021-08-12	4.3	7.46	—	4.0	0.006	0.88	0.0	0.05	30.29	0.01	2.234	6.11	0.00	1.3	98.7	0.0	0.30	0.91	0.85	—	4.0	0.006	0.68	0.0	0.04	30.22	0.00	2.325	18.25	0.00	3.0	97.0	0.0	1.75	1.56	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7PEW	13359	2024-09-27	2021-08-11	4.6	5.68	—	4.1	0.006	0.91	0.0	0.05	30.19	0.01	2.249	5.53	0.00	1.1	98.9	0.0	-0.20	0.89	0.85	—	4.1	0.005	0.67	0.0	0.04	29.50	0.00	2.311	16.51	0.00	2.0	98.0	0.0	1.72	1.20	0.89	0.86	—	13304	768	10	352	0	0	0	logfile
✔	8U5H	41922	2024-09-26	2023-09-12	3.23	3.43	—	3.4	0.005	0.71	0.0	0.06	30.15	0.00	2.200	13.39	0.85	4.6	95.4	0.0	0.94	0.72	0.83	0.90	3.4	0.007	0.71	0.0	0.04	30.20	0.00	2.127	12.64	3.54	5.0	95.0	0.0	1.20	0.39	0.71	0.84	1.12	13436	903	13	314	0	0	0	logfile
✔	7URi	26713	2024-09-23	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.37	0.0	0.06	28.69	0.01	2.168	19.15	0.00	0.0	0.0	0.0	—	2.07	0.08	0.37	—	1905	0	1	90	0	0	0	logfile
✔	7K7G	22698	2024-09-25	2020-09-22	4.2	4.83	—	4.1	0.008	1.03	0.0	0.06	29.99	0.01	2.251	7.76	0.00	4.1	95.9	0.0	-1.83	0.87	0.81	—	4.1	0.004	0.70	0.0	0.04	28.62	0.00	2.089	15.23	0.00	4.9	95.1	0.0	0.13	1.73	0.88	0.81	—	11098	766	12	246	2	0	0	logfile
✔	7PFD	13372	2024-09-27	2021-08-11	4.4	7.91	—	3.8	0.006	0.92	0.0	0.05	29.94	0.01	2.245	6.72	0.00	2.1	97.9	0.0	-0.57	0.89	0.77	—	3.8	0.006	0.78	0.0	0.04	31.25	0.01	2.311	23.53	0.00	3.8	96.2	0.0	-0.63	2.58	0.89	0.81	—	13675	843	11	344	0	0	0	logfile
✔	7Uo0	26636	2024-09-25	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	29.93	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.5	0.004	0.82	0.0	0.04	30.47	0.00	2.164	13.26	1.02	5.5	94.5	0.0	-2.29	4.73	0.83	0.62	1.66	10697	112	4	455	7	0	0	logfile

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