Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Uo0	26636	2024-09-25	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	29.93	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.5	0.004	0.82	0.0	0.04	30.47	0.00	2.164	13.26	1.02	5.5	94.5	0.0	-2.29	4.73	0.83	0.62	1.66	10697	112	4	455	7	0	0	logfile
✔	8JLB	36391	2024-09-25	2023-06-02	2.36	2.12	2.25	2.5	0.004	0.69	0.0	0.04	29.91	0.01	1.988	3.26	0.16	1.5	98.5	0.0	0.69	0.76	0.85	3.59	1.7	0.004	0.59	0.0	0.04	28.20	0.00	2.207	3.64	1.79	1.1	98.9	0.0	2.96	1.10	0.77	0.85	3.23	11844	746	10	290	0	0	0	logfile
✔	8GUK	34275	2024-09-26	2022-09-12	2.51	3.12	2.54	2.9	0.004	0.60	0.0	0.04	29.88	0.00	2.202	10.18	3.15	1.7	98.3	0.0	2.28	0.85	0.85	3.27	2.9	0.004	0.61	0.0	0.04	29.79	0.00	2.511	8.25	4.26	1.7	98.3	0.0	2.46	0.21	0.83	0.86	2.83	12098	765	10	294	0	0	0	logfile
✔	8PEo	17633	2024-09-26	2023-06-14	2.69	3.21	2.84	2.7	0.005	0.77	0.0	0.05	29.82	0.01	2.201	8.09	0.14	1.9	98.1	0.0	0.99	0.92	0.88	2.79	2.8	0.004	0.63	0.0	0.04	28.23	0.00	2.435	6.75	0.84	2.3	97.7	0.0	2.52	1.39	0.94	0.92	2.79	12835	853	12	294	0	0	0	logfile
✔	7PEY	13361	2024-09-27	2021-08-11	4.5	5.20	—	3.8	0.006	0.90	0.0	0.05	29.81	0.01	2.177	7.49	0.00	1.6	98.4	0.0	-0.09	0.89	0.84	—	3.8	0.006	0.67	0.0	0.04	29.52	0.00	2.283	16.64	0.00	3.1	96.9	0.0	1.58	1.31	0.89	0.85	—	13099	768	10	342	0	0	0	logfile
✔	7PFE	13373	2024-09-27	2021-08-11	4.4	5.35	—	3.9	0.007	0.94	0.0	0.05	29.75	0.01	2.264	6.87	0.00	1.5	98.5	0.0	-0.43	0.91	0.85	—	3.9	0.004	0.66	0.0	0.04	29.01	0.00	2.340	13.10	0.00	2.9	97.1	0.0	1.03	1.62	0.91	0.85	—	13880	843	11	354	0	0	0	logfile
✔	8JLD	36393	2024-09-25	2023-06-02	2.48	2.34	2.40	2.8	0.004	0.71	0.0	0.04	29.74	0.01	1.941	4.35	0.32	1.4	98.6	0.0	0.65	0.78	0.87	3.08	2.7	0.004	0.60	0.0	0.03	28.29	0.00	2.194	4.45	2.92	1.5	98.5	0.0	3.17	0.34	0.78	0.88	2.47	11844	746	10	290	0	0	0	logfile
✔	7NL0	12453	2024-09-25	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.74	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.004	0.60	0.0	0.03	29.61	0.00	2.505	9.74	1.91	3.1	96.9	0.0	2.58	0.28	0.77	0.81	2.99	11363	755	10	262	0	0	0	logfile
✔	7PF4	13367	2024-09-27	2021-08-11	4.0	4.72	—	3.7	0.005	0.89	0.0	0.05	29.72	0.01	2.258	6.44	0.00	2.4	97.6	0.0	-0.80	0.87	0.76	—	3.7	0.007	0.78	0.0	0.04	30.02	0.01	2.446	24.44	2.20	4.3	95.7	0.0	0.43	0.79	0.88	0.80	—	12935	768	10	334	0	0	0	logfile
✔	7oHC	12900	2024-09-25	2021-05-10	2.5	3.15	—	2.9	0.005	0.86	0.0	0.05	29.62	0.01	2.193	4.51	0.16	1.9	98.1	0.0	0.04	0.84	0.82	3.50	2.9	0.005	0.60	0.0	0.03	28.62	0.00	2.184	7.48	2.20	2.0	98.0	0.0	2.71	1.12	0.86	0.86	3.06	12019	764	10	290	0	0	0	logfile
✔	7PF6	13369	2024-09-27	2021-08-11	4.0	4.89	—	3.7	0.006	0.99	0.0	0.06	29.58	0.01	2.268	7.80	0.00	1.9	98.1	0.0	-0.75	0.87	0.76	—	3.7	0.004	0.78	0.0	0.05	29.82	0.00	2.378	18.27	1.59	3.0	97.0	0.0	0.35	2.00	0.87	0.77	—	13470	843	11	334	0	0	0	logfile
✔	8J6S	36013	2024-09-25	2023-04-26	3.8	5.06	3.99	3.8	0.004	0.79	0.0	0.04	29.58	0.01	1.907	22.08	1.06	3.9	96.1	0.0	-0.40	0.83	0.73	1.29	3.9	0.005	1.04	0.0	0.04	29.86	0.00	1.961	21.50	5.29	2.9	97.1	0.0	0.22	0.74	0.88	0.84	0.57	10030	933	12	197	0	0	0	logfile
✔	8XPY	38563	2024-09-23	2024-01-04	3.63	3.53	3.62	1.6	0.004	0.79	0.0	0.05	29.42	0.00	2.217	10.44	4.39	10.1	89.9	0.0	-4.21	0.90	0.79	2.54	1.5	0.004	0.89	0.0	0.05	15.32	0.00	2.454	10.89	2.72	12.4	87.6	0.0	-2.28	2.13	0.91	0.83	2.01	4568	546	7	0	25	0	0	logfile
✔	7WLR	32591	2024-09-25	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.27	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.003	0.53	0.0	0.03	28.01	0.00	2.165	6.90	1.41	1.2	98.8	0.0	3.29	1.20	0.77	0.82	2.12	11922	754	10	290	0	0	0	logfile
✔	7KTQ	23026	2024-09-26	2020-11-24	3.3	3.36	—	3.3	0.008	0.84	0.0	0.05	29.27	0.01	2.201	6.33	0.16	1.5	98.5	0.0	-2.43	0.77	0.85	3.63	3.3	0.004	0.58	0.0	0.03	29.10	0.00	2.110	5.15	1.60	2.3	97.7	0.0	2.82	1.42	0.79	0.88	2.51	12745	752	10	331	0	0	0	logfile
✔	8PC5	17594	2024-09-26	2023-06-09	3.02	3.37	3.06	3.0	0.006	0.79	0.0	0.06	29.26	0.01	2.205	7.09	0.42	1.9	98.1	0.0	1.05	0.90	0.86	3.01	3.0	0.004	0.59	0.0	0.03	27.74	0.00	2.366	5.88	0.98	2.5	97.5	0.0	2.40	1.95	0.93	0.91	2.45	12836	853	11	294	0	0	0	logfile
✔	7PF3	13366	2024-09-27	2021-08-11	4.0	4.81	—	3.6	0.007	0.94	0.0	0.05	29.23	0.01	2.266	6.23	0.14	2.4	97.6	0.0	-0.63	0.91	0.87	—	3.6	0.004	0.69	0.0	0.04	28.82	0.00	2.362	13.36	1.30	2.7	97.3	0.0	1.80	0.59	0.91	0.87	—	13470	843	11	334	0	0	0	logfile
✔	6M4H	30078	2024-09-25	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.22	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	4.0	0.006	0.81	0.0	0.04	29.78	0.00	2.051	16.58	2.31	3.1	96.9	0.0	0.78	1.74	0.87	0.84	0.92	9420	656	10	206	0	0	0	logfile
✔	7M1X	23626	2024-09-25	2021-03-15	3.7	4.26	—	4.1	0.007	0.78	0.0	0.04	29.13	0.01	2.244	6.51	2.27	5.5	94.4	0.1	-1.56	0.83	0.84	1.52	4.1	0.006	0.70	0.0	0.04	28.99	0.00	2.411	13.85	4.37	4.7	95.3	0.0	1.06	1.22	0.84	0.85	1.24	11475	746	10	272	0	0	0	logfile
✔	8HXZ	35083	2024-09-26	2023-01-05	3.4	4.97	3.38	2.8	0.005	0.98	0.0	0.05	29.12	0.01	2.303	7.66	0.00	3.0	97.0	0.0	-1.57	0.89	0.77	0.71	2.9	0.004	0.84	0.0	0.04	28.65	0.00	2.343	16.54	1.78	2.9	97.1	0.0	0.17	1.27	0.92	0.86	0.62	13740	879	11	328	0	0	0	logfile

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