Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WQQ	21873	2024-09-30	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	22.73	0.00	2.203	3.54	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.004	0.71	0.0	0.04	23.32	0.01	1.968	4.74	5.33	6.5	93.5	0.0	-2.80	0.32	0.74	0.82	2.54	81134	2671	28	2809	1	0	0	logfile
✔	6WRS	21887	2024-09-30	2020-04-30	3.2	2.79	3.14	3.1	0.008	0.92	10.0	0.06	24.02	0.00	2.100	6.48	3.63	7.4	92.6	0.0	-3.55	0.62	0.78	2.86	3.1	0.005	0.80	1.0	0.04	23.54	0.01	2.157	4.34	7.58	7.2	92.8	0.0	-2.84	0.37	0.72	0.84	2.33	81115	2669	28	2809	1	0	0	logfile
✔	7TTW	26125	2024-09-30	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	22.87	0.00	2.065	3.74	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.004	0.71	0.0	0.04	23.04	0.01	2.152	3.47	3.82	5.4	94.6	0.0	-2.01	0.25	0.73	0.86	3.00	80853	2661	27	2801	0	0	0	logfile
✔	7TTU	26124	2024-09-30	2022-02-01	3.0	2.90	—	3.1	0.002	0.46	0.0	0.03	22.58	0.00	2.175	4.25	0.00	3.6	96.4	0.0	-1.25	0.62	0.66	1.12	3.0	0.003	0.62	0.0	0.04	23.01	0.00	2.295	4.13	3.73	4.7	95.3	0.0	-1.75	0.85	0.75	0.87	2.53	80724	2661	27	2795	0	0	0	logfile
✔	5FLX	3221	2024-09-30	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	21.37	0.00	0.894	15.92	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.005	0.91	4.0	0.04	22.89	0.01	1.812	21.35	5.25	9.0	90.6	0.5	-1.74	1.52	0.48	0.81	0.67	80592	4810	40	1972	76	0	0	logfile
✔	6PPK	20441	2024-09-30	2019-07-07	4.4	4.58	—	4.5	0.008	1.08	15.0	0.05	26.18	0.01	1.150	22.61	8.03	11.8	87.5	0.7	-4.28	0.88	0.83	—	4.4	0.004	0.73	0.0	0.04	25.33	0.00	2.016	18.77	0.00	8.8	91.2	0.0	-2.22	1.60	0.88	0.84	—	80451	2684	25	2770	1	0	0	logfile
✔	8EUY	24420	2024-09-30	2022-10-19	3.0	3.03	—	3.0	0.003	0.51	0.0	0.04	22.60	0.00	2.180	10.11	2.88	3.6	96.2	0.1	0.10	0.77	0.77	2.72	2.9	0.003	0.58	0.0	0.04	22.19	0.00	2.193	8.98	2.60	3.7	96.2	0.1	0.55	1.53	0.77	0.77	2.85	80249	6123	41	1619	1	0	0	logfile
✔	6GC4	4380	2024-09-30	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	22.72	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.006	0.71	0.0	0.04	23.16	0.01	2.034	17.83	0.09	10.1	89.7	0.1	-2.37	0.99	0.80	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	6ZVi	11457	2024-09-30	2020-07-24	3.0	3.20	3.13	3.0	0.007	0.97	0.0	0.05	23.04	0.01	1.914	5.92	0.02	5.2	94.6	0.2	-2.84	0.55	0.84	2.91	3.0	0.005	0.77	2.0	0.04	22.95	0.01	2.067	9.35	2.45	8.9	91.0	0.1	-1.27	1.87	0.56	0.87	2.24	80088	4918	40	1946	2	0	0	logfile
✔	8ETJ	24396	2024-09-30	2022-10-17	3.2	3.29	—	3.1	0.004	0.61	0.0	0.04	23.14	0.00	2.061	12.38	0.81	4.9	94.9	0.2	-0.83	0.80	0.81	2.29	3.1	0.003	0.63	0.0	0.04	22.70	0.00	2.136	10.52	2.79	4.7	95.2	0.1	-0.08	1.17	0.81	0.84	1.98	79857	4979	36	1961	1	0	0	logfile
✔	6DDG	7870	2024-09-30	2018-05-10	3.1	3.10	—	3.0	0.007	0.78	0.0	0.04	23.68	0.01	2.040	15.94	0.05	9.4	90.6	0.0	-4.42	0.79	0.83	3.49	3.0	0.006	0.74	0.0	0.04	23.50	0.01	2.139	6.70	3.55	8.1	91.9	0.0	-2.29	0.42	0.81	0.85	2.76	79584	2633	28	2750	1	0	0	logfile
✔	6ZN5	11310	2024-09-30	2020-07-06	3.2	3.14	—	3.1	0.011	1.16	0.0	0.06	22.68	0.01	2.124	5.06	0.53	6.9	92.9	0.1	-4.30	0.80	0.80	2.26	3.1	0.003	0.65	0.0	0.04	22.67	0.00	2.093	7.95	2.42	4.9	95.1	0.0	-1.35	1.15	0.82	0.83	1.86	79377	5478	39	1671	3	0	0	logfile
✔	6P4H	20249	2024-09-30	2019-05-27	3.2	3.13	3.20	3.1	0.010	1.43	0.0	0.10	22.89	0.00	2.179	2.56	2.17	6.6	92.8	0.7	-3.62	0.67	0.75	2.61	3.1	0.006	0.74	0.0	0.04	23.03	0.01	2.186	8.81	3.46	4.8	95.2	0.0	-0.69	0.59	0.78	0.82	2.04	79374	4862	36	1900	0	0	0	logfile
✔	6P4G	20248	2024-09-30	2019-05-27	3.1	3.17	3.36	3.1	0.010	1.45	4.0	0.10	23.13	0.00	2.232	2.63	3.36	8.9	90.2	0.9	-4.06	0.67	0.74	2.52	3.1	0.003	0.63	0.0	0.04	23.11	0.00	2.167	9.27	4.34	4.8	95.2	0.0	-1.02	1.37	0.75	0.79	1.90	79374	4862	36	1900	0	0	0	logfile
✔	6DDD	7867	2024-09-30	2018-05-10	3.1	3.19	—	3.1	0.008	0.85	0.0	0.05	23.61	0.01	1.998	16.48	0.05	10.6	89.4	0.0	-4.62	0.78	0.84	3.48	3.1	0.004	0.64	1.0	0.04	23.28	0.00	2.122	7.13	3.07	6.1	93.8	0.0	-2.10	2.17	0.79	0.85	2.74	79118	2568	28	2750	1	0	0	logfile
✔	6ZVH	11456	2024-09-30	2020-07-24	2.9	3.10	2.84	2.8	0.008	0.95	1.0	0.05	21.80	0.01	1.992	4.95	0.00	4.9	94.9	0.2	-2.07	0.54	0.88	3.23	2.8	0.005	0.70	0.0	0.04	21.94	0.01	1.867	6.54	1.60	7.9	92.0	0.1	-0.80	1.10	0.54	0.89	2.71	79014	5074	43	1815	33	0	0	logfile
✔	6J6N	0691	2024-09-30	2019-01-15	3.86	3.99	—	3.8	0.008	1.02	1.0	0.09	17.31	0.01	1.820	15.60	2.51	5.1	94.2	0.8	-3.41	0.60	0.63	1.26	3.8	0.003	0.73	0.0	0.04	18.29	0.00	1.854	12.59	2.60	5.4	94.4	0.1	0.17	1.63	0.65	0.72	1.03	78937	8982	47	544	14	0	0	logfile
✔	7SYo	25535	2024-09-30	2021-11-25	4.6	3.80	4.55	3.8	0.003	0.85	0.0	0.04	22.28	0.01	2.226	5.43	0.05	5.1	94.9	0.0	-2.93	0.62	0.68	—	3.7	0.002	0.60	0.0	0.04	22.16	0.00	2.004	10.09	0.02	5.1	94.9	0.0	-1.31	1.10	0.62	0.69	—	78846	4891	38	1863	2	0	0	logfile
✔	7SYG	25527	2024-09-30	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	22.16	0.01	2.257	4.87	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.005	0.78	0.0	0.04	22.35	0.01	2.155	13.72	0.05	8.2	91.8	0.0	-1.82	1.10	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile
✔	7SYM	25533	2024-09-30	2021-11-25	4.8	3.64	4.44	3.5	0.003	0.83	1.0	0.04	22.25	0.01	2.245	5.29	0.00	5.3	94.7	0.0	-2.78	0.63	0.68	—	3.5	0.002	0.57	0.0	0.03	22.01	0.00	2.156	8.53	0.05	4.2	95.8	0.0	-1.27	1.06	0.64	0.69	—	78761	4891	38	1859	2	0	0	logfile

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