Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SYK	25531	2024-09-30	2021-11-25	4.2	3.51	4.09	3.3	0.003	0.83	0.0	0.04	22.20	0.01	2.255	5.27	0.02	5.9	94.0	0.0	-2.72	0.67	0.67	—	3.3	0.004	0.73	0.0	0.04	22.19	0.01	2.099	12.80	0.07	9.4	90.6	0.0	-1.76	1.44	0.68	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYN	25534	2024-09-30	2021-11-25	4.0	3.26	3.82	3.2	0.002	0.49	0.0	0.03	21.99	0.00	2.115	9.69	0.00	4.8	95.2	0.0	-0.83	0.64	0.72	—	3.2	0.004	0.68	0.0	0.04	22.38	0.01	2.147	9.50	2.85	7.9	92.1	0.0	-1.32	1.04	0.65	0.74	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYJ	25530	2024-09-30	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	21.81	0.01	2.240	5.37	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.004	0.72	0.0	0.04	22.06	0.01	1.919	15.34	0.00	8.6	91.4	0.0	-1.73	1.31	0.74	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYi	25529	2024-09-30	2021-11-25	4.5	3.59	4.35	3.4	0.004	0.87	0.0	0.04	22.09	0.01	2.213	5.70	0.00	6.6	93.3	0.0	-2.89	0.67	0.65	—	3.4	0.003	0.66	0.0	0.04	22.14	0.00	2.039	12.65	0.00	7.1	92.8	0.0	-1.97	1.42	0.68	0.67	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYH	25528	2024-09-30	2021-11-25	4.6	3.30	4.36	3.2	0.003	0.79	2.0	0.04	21.81	0.01	2.250	5.14	0.02	5.7	94.2	0.0	-2.97	0.62	0.60	—	3.2	0.005	0.80	0.0	0.04	22.08	0.01	2.063	14.38	0.00	8.6	91.4	0.0	-1.78	1.17	0.63	0.63	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYL	25532	2024-09-30	2021-11-25	4.5	3.40	4.38	3.3	0.004	0.87	0.0	0.04	22.27	0.01	2.191	6.19	0.02	6.6	93.4	0.0	-3.03	0.63	0.59	—	3.3	0.004	0.69	0.0	0.04	22.28	0.01	2.110	13.21	0.02	7.1	92.9	0.0	-1.96	1.07	0.66	0.63	—	78748	4891	38	1859	2	0	0	logfile
✔	8EUP	24410	2024-09-30	2022-10-19	3.1	3.34	—	3.2	0.004	0.56	0.0	0.04	22.51	0.00	2.108	12.23	0.40	5.3	94.6	0.1	-0.11	0.72	0.69	1.81	3.2	0.004	0.60	0.0	0.04	22.14	0.00	2.006	10.63	3.38	4.6	95.3	0.1	0.29	0.39	0.74	0.72	1.68	78722	6156	41	1623	1	0	0	logfile
✔	8HDR	34678	2024-09-30	2022-11-06	3.66	3.32	3.68	3.3	0.005	0.66	0.0	0.05	13.59	0.00	2.116	12.84	8.30	9.0	91.0	0.0	-2.65	0.60	0.74	1.89	3.3	0.006	0.78	1.0	0.05	16.20	0.00	1.529	10.58	6.55	8.3	91.7	0.0	-2.18	0.84	0.63	0.78	2.11	78708	10296	54	0	0	0	0	logfile
✔	8oW1	17227	2024-09-30	2023-04-26	3.7	5.06	5.11	3.9	0.003	0.65	0.0	0.04	18.38	0.00	1.800	10.59	1.37	3.0	97.0	0.0	0.32	0.75	0.49	0.28	3.9	0.005	0.74	0.0	0.04	19.35	0.00	2.406	17.34	1.46	3.6	96.3	0.0	0.67	4.52	0.88	0.75	0.43	78671	8932	42	306	0	0	0	logfile
✔	5WVE	6690	2024-09-30	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.50	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.003	0.83	0.0	0.04	13.68	0.00	1.841	18.85	0.00	7.2	92.2	0.6	-1.71	2.03	0.79	0.59	—	78605	9766	39	0	21	0	0	logfile
✔	6SJ6	10212	2024-09-29	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	23.89	0.01	1.886	4.33	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.005	0.75	0.0	0.04	23.47	0.01	1.856	5.90	3.91	11.8	88.2	0.0	-3.81	2.00	0.79	0.79	2.48	78296	2611	27	2697	59	0	0	logfile
✔	6iD0	9646	2024-09-30	2018-09-07	2.9	3.04	—	3.0	0.009	1.39	19.0	0.10	16.69	0.01	1.607	10.97	1.46	7.0	91.9	1.0	-2.86	0.63	0.68	2.82	3.0	0.006	0.85	1.0	0.05	18.01	0.01	1.944	9.84	3.54	6.7	93.0	0.3	0.32	0.75	0.69	0.80	2.30	78004	10389	48	405	16	0	0	logfile
✔	6ZJA	11233	2024-09-30	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.31	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.003	0.68	0.0	0.05	16.09	0.00	1.868	1.30	0.68	4.2	95.8	0.0	0.23	0.39	0.78	0.90	6.59	77951	9684	60	0	36	3191	0	logfile
✔	3JAM	3047	2024-09-29	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	25.28	0.01	1.398	7.14	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.003	0.71	0.0	0.04	23.82	0.01	1.880	9.59	5.49	8.9	90.1	1.0	-0.86	0.69	0.67	0.86	1.52	77850	5056	42	1780	83	0	0	logfile
✔	8Q30	18119	2024-09-30	2023-08-03	3.22	3.61	3.25	3.5	0.006	0.82	3.0	0.06	13.15	0.01	1.978	8.06	0.45	0.9	99.1	0.0	1.02	0.77	0.89	3.64	3.5	0.003	0.63	0.0	0.05	13.11	0.00	2.510	6.15	2.13	1.3	98.7	0.0	1.47	1.12	0.78	0.90	3.42	77784	10152	288	0	408	0	0	logfile
✔	3J80	2764	2024-09-30	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	26.05	0.01	1.747	9.35	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.87	0.0	0.04	24.84	0.01	1.724	19.47	6.10	11.3	87.3	1.4	-1.93	1.59	0.78	0.82	0.84	77716	5039	41	1779	70	0	0	logfile
✔	8ETH	24409	2024-09-29	2022-10-17	3.8	2.97	—	2.9	0.006	0.62	0.0	0.04	21.94	0.01	2.088	10.10	0.53	5.2	94.6	0.2	-0.47	0.63	0.61	2.70	2.9	0.002	0.58	0.0	0.04	21.74	0.00	2.068	8.45	2.71	4.1	95.7	0.2	0.19	1.12	0.62	0.59	2.28	77577	6161	42	1508	1	0	0	logfile
✔	6Z6o	11101	2024-09-30	2020-05-28	3.8	4.70	—	4.2	0.006	0.92	0.0	0.05	15.43	0.01	2.104	8.05	0.96	7.9	92.1	0.0	-3.37	0.84	0.81	0.94	4.2	0.003	0.67	0.0	0.04	16.39	0.00	1.995	10.86	1.76	6.2	93.8	0.0	-0.20	0.52	0.84	0.81	0.82	77516	9628	24	0	8	0	0	logfile
✔	5MQ0	3541	2024-09-30	2016-12-19	4.17	4.40	—	4.2	0.010	1.54	21.0	0.11	17.52	0.01	0.679	7.92	2.73	7.7	91.4	0.9	-2.01	0.68	0.56	—	4.1	0.004	0.73	0.0	0.04	17.00	0.00	1.880	15.41	0.00	5.7	94.3	0.1	0.03	2.10	0.74	0.74	—	77441	9673	53	448	99	0	0	logfile
✔	8UXX	42788	2024-09-30	2023-11-11	3.2	3.48	3.27	3.5	0.012	1.91	8.0	0.10	15.07	0.02	1.821	0.17	2.29	4.4	95.5	0.1	-2.07	0.64	0.74	3.38	3.5	0.003	0.62	0.0	0.04	15.97	0.00	0.978	4.25	1.64	3.3	96.7	0.0	-0.16	2.06	0.72	0.84	2.45	77402	4916	26	0	27	5	38340	logfile

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