Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JJJ	22354	2024-09-25	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.68	0.0	0.05	11.76	0.00	2.444	8.91	0.03	3.9	96.1	0.0	0.04	1.43	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	6J3Y	9775	2024-09-29	2019-01-07	3.3	3.49	—	3.4	0.019	1.77	4.0	0.14	19.66	0.01	1.372	10.02	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.003	0.67	0.0	0.04	16.85	0.00	2.219	10.71	1.40	3.5	96.5	0.0	0.50	0.65	0.78	0.87	2.78	70136	6984	90	0	428	0	0	logfile
✔	7V7J	31773	2024-09-24	2021-08-21	3.4	4.17	—	3.8	0.005	0.64	0.0	0.05	14.70	0.00	2.144	9.62	0.00	6.1	93.8	0.1	-0.39	0.86	0.85	2.06	3.8	0.006	0.65	0.0	0.05	14.21	0.00	2.407	6.65	1.18	6.2	93.7	0.1	-0.50	0.32	0.87	0.87	1.74	51072	6228	84	0	174	0	0	logfile
✔	7V7i	31772	2024-09-24	2021-08-21	3.3	4.09	—	3.8	0.005	0.67	0.0	0.05	14.45	0.00	2.128	8.29	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.004	0.58	0.0	0.04	14.27	0.00	2.436	4.92	1.25	4.8	95.1	0.1	-0.15	0.33	0.87	0.87	1.94	51072	6228	84	0	174	0	0	logfile
✔	7V7H	31771	2024-09-24	2021-08-21	3.2	4.02	—	3.7	0.004	0.62	0.0	0.05	14.69	0.00	2.162	7.22	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.003	0.60	0.0	0.05	14.35	0.00	2.455	5.38	0.94	4.6	95.3	0.0	-0.25	1.15	0.85	0.85	1.81	50949	6209	84	0	174	0	0	logfile
✔	8DVD	27735	2024-09-29	2022-07-28	4.12	4.71	4.34	4.3	0.007	1.07	0.0	0.07	24.44	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.005	0.92	0.0	0.05	13.11	0.01	2.389	11.38	0.00	8.4	91.5	0.1	-1.56	1.77	0.84	0.81	—	20804	2137	83	0	302	0	0	logfile
✔	7JSV	22460	2024-09-29	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	14.87	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.80	0.0	0.04	16.90	0.00	2.467	11.92	2.77	1.3	98.7	0.0	2.20	0.87	0.65	0.84	3.08	22140	2706	82	0	41	0	0	logfile
✔	8ToX	41461	2024-09-29	2023-08-04	2.3	3.05	2.35	2.8	0.005	0.75	0.0	0.05	19.29	0.00	2.205	3.52	0.51	2.9	97.1	0.0	0.74	0.82	0.85	4.45	2.8	0.005	0.91	2.0	0.05	14.88	0.00	1.978	6.47	1.90	2.9	97.1	0.0	0.83	0.39	0.83	0.90	4.36	22008	2490	78	0	159	369	0	logfile
✔	8HFQ	34724	2024-09-25	2022-11-11	2.64	2.27	2.58	2.5	0.012	1.31	1.0	0.06	14.44	0.01	1.919	13.48	0.45	1.7	98.2	0.1	-0.95	0.76	0.80	3.80	2.4	0.004	0.71	0.0	0.04	17.03	0.01	2.187	10.34	1.91	1.5	98.5	0.0	2.05	1.61	0.79	0.84	4.01	54193	6851	76	0	54	0	0	logfile
✔	6TH3	10502	2024-09-26	2019-11-18	4.0	4.17	4.09	4.0	0.007	1.10	0.0	0.05	10.47	0.01	2.268	4.52	0.00	16.5	83.5	0.0	-5.42	0.64	0.56	—	4.0	0.005	0.88	0.0	0.05	15.40	0.01	2.412	8.54	2.38	12.6	87.4	0.0	-1.88	1.68	0.74	0.78	—	60600	7800	75	0	0	0	0	logfile
✔	6S61	10101	2024-09-28	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.62	0.0	0.04	14.89	0.00	2.160	2.50	0.65	1.3	98.7	0.0	4.32	0.78	0.80	0.90	8.67	71060	4128	72	0	30	3854	32904	logfile
✔	7LQE	23483	2024-09-23	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.149	5.04	239.0	0.38	26.17	0.02	1.722	131.22	25.69	30.6	69.1	0.3	-7.33	1.54	0.65	0.90	1.75	6048	576	72	0	0	0	0	logfile
✔	7A6A	11668	2024-09-29	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.60	0.0	0.04	14.88	0.00	2.244	1.45	1.82	1.8	98.2	0.0	4.83	0.41	0.69	0.81	8.90	41613	4152	72	0	32	4621	0	logfile
✔	8EMQ	28259	2024-09-27	2022-09-28	1.66	1.59	1.68	1.6	0.011	1.31	0.0	0.07	15.25	0.01	0.733	5.98	1.91	0.6	99.4	0.0	2.37	0.66	0.78	9.05	1.6	0.004	0.67	0.0	0.04	14.73	0.01	2.110	3.28	0.64	1.8	98.2	0.0	5.21	0.42	0.82	0.89	8.89	37805	4128	72	0	30	2975	0	logfile
✔	7RRP	24665	2024-09-28	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.003	0.57	0.0	0.04	14.38	0.00	2.069	1.76	0.91	2.4	97.6	0.0	4.27	0.07	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	6Z9F	11122	2024-09-29	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.004	0.72	0.0	0.04	15.17	0.01	2.247	3.34	3.02	1.8	98.2	0.0	4.53	0.91	0.84	0.86	8.47	41020	4152	72	0	32	4172	0	logfile
✔	7X9W	33084	2024-09-26	2022-03-16	2.78	2.90	2.88	2.9	0.008	0.84	12.0	0.06	15.86	0.01	2.241	6.77	6.86	3.8	96.2	0.0	-2.46	0.78	0.83	3.91	2.9	0.003	0.59	0.0	0.04	17.32	0.00	2.134	6.31	2.27	1.5	98.5	0.0	-1.17	0.44	0.77	0.84	4.05	59640	7368	72	0	24	48	0	logfile
✔	6M3X	30073	2024-09-26	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.90	7.35	2.3	0.005	0.72	0.0	0.05	16.97	0.00	2.197	5.64	1.48	3.2	96.8	0.0	0.21	0.42	0.79	0.91	6.40	62387	7440	72	0	24	2243	0	logfile
✔	7N65	24195	2024-09-29	2021-06-07	4.15	4.35	—	4.2	0.011	1.36	0.0	0.07	20.89	0.01	1.935	36.06	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.2	0.004	0.93	0.0	0.05	12.75	0.01	2.197	18.07	0.05	11.4	88.6	0.0	-2.89	1.52	0.77	0.76	—	21525	2454	72	0	189	0	0	logfile
✔	8SZZ	40926	2024-09-23	2023-05-30	2.9	3.06	2.89	3.0	0.005	0.71	0.0	0.05	14.17	0.01	2.197	3.30	0.43	1.5	98.5	0.0	-1.08	0.72	0.85	3.42	3.0	0.003	0.52	0.0	0.04	17.37	0.00	2.305	3.90	1.15	1.7	98.3	0.0	2.36	0.48	0.74	0.87	3.00	48815	6504	72	0	24	0	0	logfile

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