Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WRS	21887	2024-09-30	2020-04-30	3.2	2.79	3.14	3.1	0.008	0.92	10.0	0.06	24.02	0.00	2.100	6.48	3.63	7.4	92.6	0.0	-3.55	0.62	0.78	2.86	3.1	0.005	0.80	1.0	0.04	23.54	0.01	2.157	4.34	7.58	7.2	92.8	0.0	-2.84	0.37	0.72	0.84	2.33	81115	2669	28	2809	1	0	0	logfile
✔	6WQQ	21873	2024-09-30	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	22.73	0.00	2.203	3.54	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.004	0.71	0.0	0.04	23.32	0.01	1.968	4.74	5.33	6.5	93.5	0.0	-2.80	0.32	0.74	0.82	2.54	81134	2671	28	2809	1	0	0	logfile
✔	7TTW	26125	2024-09-30	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	22.87	0.00	2.065	3.74	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.004	0.71	0.0	0.04	23.04	0.01	2.152	3.47	3.82	5.4	94.6	0.0	-2.01	0.25	0.73	0.86	3.00	80853	2661	27	2801	0	0	0	logfile
✔	7TTU	26124	2024-09-30	2022-02-01	3.0	2.90	—	3.1	0.002	0.46	0.0	0.03	22.58	0.00	2.175	4.25	0.00	3.6	96.4	0.0	-1.25	0.62	0.66	1.12	3.0	0.003	0.62	0.0	0.04	23.01	0.00	2.295	4.13	3.73	4.7	95.3	0.0	-1.75	0.85	0.75	0.87	2.53	80724	2661	27	2795	0	0	0	logfile
✔	6PPK	20441	2024-09-30	2019-07-07	4.4	4.58	—	4.5	0.008	1.08	15.0	0.05	26.18	0.01	1.150	22.61	8.03	11.8	87.5	0.7	-4.28	0.88	0.83	—	4.4	0.004	0.73	0.0	0.04	25.33	0.00	2.016	18.77	0.00	8.8	91.2	0.0	-2.22	1.60	0.88	0.84	—	80451	2684	25	2770	1	0	0	logfile
✔	6DDG	7870	2024-09-30	2018-05-10	3.1	3.10	—	3.0	0.007	0.78	0.0	0.04	23.68	0.01	2.040	15.94	0.05	9.4	90.6	0.0	-4.42	0.79	0.83	3.49	3.0	0.006	0.74	0.0	0.04	23.50	0.01	2.139	6.70	3.55	8.1	91.9	0.0	-2.29	0.42	0.81	0.85	2.76	79584	2633	28	2750	1	0	0	logfile
✔	6DDD	7867	2024-09-30	2018-05-10	3.1	3.19	—	3.1	0.008	0.85	0.0	0.05	23.61	0.01	1.998	16.48	0.05	10.6	89.4	0.0	-4.62	0.78	0.84	3.48	3.1	0.004	0.64	1.0	0.04	23.28	0.00	2.122	7.13	3.07	6.1	93.8	0.0	-2.10	2.17	0.79	0.85	2.74	79118	2568	28	2750	1	0	0	logfile
✔	6GC4	4380	2024-09-30	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	22.72	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.006	0.71	0.0	0.04	23.16	0.01	2.034	17.83	0.09	10.1	89.7	0.1	-2.37	0.99	0.80	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	6SJ6	10212	2024-09-29	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	23.89	0.01	1.886	4.33	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.005	0.75	0.0	0.04	23.47	0.01	1.856	5.90	3.91	11.8	88.2	0.0	-3.81	2.00	0.79	0.79	2.48	78296	2611	27	2697	59	0	0	logfile
✔	6PPF	20435	2024-09-28	2019-07-06	3.4	3.48	—	3.4	0.006	0.88	13.0	0.05	25.55	0.00	1.152	14.99	7.36	9.0	90.1	0.9	-4.80	0.73	0.73	1.38	3.4	0.006	0.78	0.0	0.04	25.00	0.01	1.973	8.77	5.58	9.6	90.4	0.0	-2.91	1.24	0.82	0.83	1.66	71835	2101	22	2583	0	13	0	logfile
✔	7S9U	24937	2024-09-27	2021-09-21	3.2	3.94	—	3.1	0.011	0.96	0.0	0.06	24.72	0.01	1.016	12.03	1.90	15.2	84.3	0.4	-5.38	0.66	0.63	2.37	3.1	0.003	0.60	0.0	0.03	24.12	0.00	2.109	6.15	2.24	6.4	93.5	0.1	-2.21	0.95	0.89	0.90	1.73	68620	2090	19	2436	0	0	0	logfile
✔	7SAE	24950	2024-09-27	2021-09-22	3.0	3.49	—	3.0	0.008	0.99	0.0	0.05	24.29	0.01	2.251	2.73	0.29	7.8	92.1	0.1	-4.37	0.81	0.78	3.61	3.0	0.005	0.66	0.0	0.04	23.99	0.01	2.054	4.93	1.84	6.8	93.2	0.0	-1.84	0.92	0.87	0.91	2.92	68571	2090	19	2434	0	0	0	logfile
✔	8C8Z	16496	2024-09-27	2023-01-21	3.12	3.41	3.24	3.1	0.002	0.42	0.0	0.03	22.60	0.00	1.882	6.67	0.05	7.0	93.0	0.1	0.01	0.77	0.79	2.28	3.1	0.006	0.64	0.0	0.04	22.74	0.00	2.000	9.02	3.29	8.6	91.3	0.1	-1.32	1.33	0.81	0.85	2.22	67990	2311	24	2324	0	0	0	logfile
✔	8C90	16497	2024-09-26	2023-01-21	3.15	3.51	3.31	3.1	0.002	0.38	0.0	0.03	22.69	0.00	1.866	5.45	0.00	5.1	94.8	0.0	0.48	0.79	0.79	1.77	3.2	0.005	0.69	1.0	0.04	23.08	0.00	2.017	11.12	3.61	7.6	92.4	0.0	-1.09	0.54	0.81	0.85	1.96	64726	2183	22	2219	0	0	0	logfile
✔	6GC6	4381	2024-09-26	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	22.33	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.007	0.71	0.0	0.04	23.24	0.01	1.971	24.89	0.00	9.5	90.4	0.0	-2.02	2.12	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	8C91	16498	2024-09-26	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	22.46	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.68	0.0	0.04	23.84	0.01	1.984	23.33	0.00	9.2	90.7	0.1	-1.82	0.91	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	5FLX	3221	2024-09-30	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	21.37	0.00	0.894	15.92	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.005	0.91	4.0	0.04	22.89	0.01	1.812	21.35	5.25	9.0	90.6	0.5	-1.74	1.52	0.48	0.81	0.67	80592	4810	40	1972	76	0	0	logfile
✔	8ETJ	24396	2024-09-30	2022-10-17	3.2	3.29	—	3.1	0.004	0.61	0.0	0.04	23.14	0.00	2.061	12.38	0.81	4.9	94.9	0.2	-0.83	0.80	0.81	2.29	3.1	0.003	0.63	0.0	0.04	22.70	0.00	2.136	10.52	2.79	4.7	95.2	0.1	-0.08	1.17	0.81	0.84	1.98	79857	4979	36	1961	1	0	0	logfile
✔	6ZVi	11457	2024-09-30	2020-07-24	3.0	3.20	3.13	3.0	0.007	0.97	0.0	0.05	23.04	0.01	1.914	5.92	0.02	5.2	94.6	0.2	-2.84	0.55	0.84	2.91	3.0	0.005	0.77	2.0	0.04	22.95	0.01	2.067	9.35	2.45	8.9	91.0	0.1	-1.27	1.87	0.56	0.87	2.24	80088	4918	40	1946	2	0	0	logfile
✔	6GC7	4382	2024-09-24	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	22.57	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.007	0.72	0.0	0.04	23.21	0.01	1.965	22.43	0.00	9.1	90.8	0.1	-2.05	2.06	0.91	0.87	—	54410	1738	17	1901	0	0	0	logfile

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