Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LQF	23484	2024-09-23	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.28	240.0	0.42	26.83	0.03	1.674	199.65	28.12	58.2	40.2	1.6	-9.12	2.29	0.69	0.87	3.16	5376	512	64	0	0	0	0	logfile
✔	7LQE	23483	2024-09-23	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.149	5.04	239.0	0.38	26.17	0.02	1.722	131.22	25.69	30.6	69.1	0.3	-7.33	1.54	0.65	0.90	1.75	6048	576	72	0	0	0	0	logfile
✔	7LQH	23486	2024-09-26	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.110	4.14	180.0	0.30	23.66	0.02	1.889	109.96	25.00	20.5	79.5	0.0	-5.87	3.62	0.65	0.87	3.05	12096	1152	144	0	0	0	0	logfile
✔	7LQG	23485	2024-09-26	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.27	170.0	0.30	23.47	0.02	1.928	112.95	25.35	17.5	82.5	0.0	-6.19	1.11	0.67	0.87	3.23	12096	1152	144	0	0	0	0	logfile
✔	6BWi	7299	2024-09-30	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.18	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.98	90.0	0.27	23.37	0.03	1.910	88.76	34.11	35.7	60.8	3.5	-8.21	2.56	0.80	0.86	1.59	23491	2484	8	0	813	0	0	logfile
✔	8oKR	16930	2024-09-23	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.55	65.0	0.43	29.67	0.04	1.662	155.51	10.71	48.3	41.7	10.0	-7.71	2.19	0.63	0.89	1.74	1608	168	24	0	0	0	0	logfile
✔	7Q5A	13830	2024-09-27	2021-11-03	2.46	2.69	—	2.6	0.012	1.12	0.0	0.06	9.68	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.052	2.81	43.0	0.20	16.17	0.01	1.689	7.32	6.75	0.0	100.0	0.0	1.18	1.63	0.68	0.87	6.18	61600	5600	2400	0	1600	0	0	logfile
✔	7X7M	33041	2024-09-28	2022-03-09	2.33	2.38	2.34	2.3	0.007	0.72	13.0	0.05	17.99	0.01	2.256	4.82	2.56	2.6	97.4	0.0	2.72	0.78	0.86	3.51	2.3	0.005	0.67	42.0	0.05	18.61	0.01	2.543	4.03	4.10	2.6	97.4	0.0	2.32	1.18	0.80	0.88	3.61	70620	9240	60	0	0	0	0	logfile
✔	8AZS	15770	2024-09-24	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.2	0.028	4.05	31.0	0.17	24.42	0.02	2.053	345.81	15.67	48.7	44.4	6.9	-8.17	17.49	0.18	0.16	-0.10	9036	1224	36	0	0	0	0	logfile
✔	7EQ9	31256	2024-09-26	2021-04-30	3.3	3.70	3.42	3.6	0.002	0.47	0.0	0.04	15.65	0.00	2.267	3.70	0.00	3.3	96.7	0.0	1.85	0.60	0.53	0.80	3.6	0.006	1.33	28.0	0.05	17.56	0.01	2.009	6.14	2.53	2.5	97.5	0.0	2.34	0.64	0.80	0.81	1.37	62520	7620	60	0	0	0	0	logfile
✔	8B3A	15824	2024-09-23	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	5.90	24.0	0.41	22.68	0.05	1.864	283.65	44.76	66.7	4.0	29.3	-10.74	2.50	0.40	0.52	2.89	2010	210	60	0	60	0	0	logfile
✔	7R4R	14315	2024-09-24	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.32	18.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.005	1.43	17.0	0.24	16.32	0.00	1.805	22.48	5.22	8.9	91.1	0.1	-2.49	1.29	0.67	0.59	-0.26	50505	3293	12	0	43	0	24171	logfile
✔	7ZMA	14793	2024-09-28	2022-04-19	2.9	3.20	3.03	3.2	0.003	0.89	11.0	0.17	12.20	0.00	2.013	4.62	0.00	5.5	94.5	0.0	-0.24	0.64	0.73	3.49	3.2	0.004	0.92	14.0	0.18	15.35	0.01	2.163	5.58	1.91	7.3	92.7	0.0	-0.29	0.60	0.67	0.78	3.67	18816	1214	2	0	0	0	9332	logfile
✔	7UUQ	26800	2024-09-23	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.883	46.48	13.19	67.3	30.4	2.4	-10.55	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	8CY7	27069	2024-09-25	2022-05-23	2.9	3.84	3.06	3.3	0.003	0.76	10.0	0.17	13.02	0.00	2.018	5.28	0.26	3.7	96.1	0.1	0.96	0.83	0.76	2.16	3.3	0.004	0.79	10.0	0.17	13.07	0.00	2.249	5.36	0.50	5.4	94.5	0.1	0.35	1.22	0.84	0.79	2.43	54932	3513	21	0	74	0	26549	logfile
✔	7R4Q	14314	2024-09-24	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	16.09	0.02	1.866	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.005	1.10	8.0	0.17	15.29	0.01	1.971	20.81	1.38	7.9	92.1	0.0	-1.91	1.65	0.62	0.55	0.51	51420	3414	13	0	43	0	24182	logfile
✔	6SB3	10134	2024-09-29	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	13.00	0.00	2.104	13.24	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.6	0.006	0.83	6.0	0.05	15.82	0.01	2.125	15.00	4.18	6.2	93.8	0.0	-1.46	1.22	0.71	0.76	0.97	75712	9664	32	0	32	0	0	logfile
✔	6VY2	21456	2024-09-29	2020-02-25	4.86	6.05	—	5.2	0.007	1.11	0.0	0.08	22.30	0.00	2.056	18.44	4.96	5.7	93.8	0.5	-2.41	0.82	0.78	—	5.2	0.013	1.85	6.0	0.14	20.40	0.01	1.769	36.64	0.00	7.3	92.4	0.4	-2.30	1.09	0.81	0.75	—	21426	2442	66	0	180	0	0	logfile
✔	6o2N	0609	2024-09-29	2019-02-24	3.7	3.87	—	3.8	0.006	0.93	0.0	0.06	15.00	0.01	2.266	4.97	0.55	9.7	90.3	0.0	-4.61	0.78	0.85	1.59	3.8	0.005	0.81	5.0	0.05	16.10	0.00	2.030	7.83	3.75	7.6	92.4	0.0	-2.77	0.43	0.78	0.85	1.28	72637	9218	14	0	0	0	0	logfile
✔	7B5i	12034	2024-09-27	2020-12-03	2.8	2.89	2.91	2.8	0.006	0.81	0.0	0.05	13.15	0.01	2.309	4.79	0.26	3.7	96.3	0.0	-1.72	0.64	0.84	3.97	2.8	0.004	0.84	5.0	0.05	15.82	0.00	2.213	2.71	2.02	3.0	97.0	0.0	-0.77	4.58	0.67	0.87	3.91	64458	8100	30	0	0	0	0	logfile

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