Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Z3A	11055	2024-09-23	2020-05-19	3.8	4.08	—	3.8	0.007	1.25	2.0	0.06	12.66	0.01	1.678	10.98	1.08	11.1	88.8	0.1	-4.47	0.78	0.75	0.21	3.8	0.006	1.09	5.0	0.05	15.82	0.01	1.606	26.74	3.63	9.3	90.7	0.0	-1.78	2.32	0.80	0.76	0.00	46142	5730	6	0	4	0	0	logfile
✔	7U1S	26304	2024-09-29	2022-02-22	3.8	3.89	—	3.9	0.003	0.54	0.0	0.04	18.59	0.00	2.253	6.13	0.10	5.6	94.4	0.0	-0.53	0.53	0.75	2.13	3.9	0.006	0.91	5.0	0.05	18.03	0.01	2.138	12.95	5.99	5.7	94.3	0.0	-0.23	0.62	0.55	0.77	1.39	21225	2792	11	0	26	0	0	logfile
✔	7B5i	12034	2024-09-27	2020-12-03	2.8	2.89	2.91	2.8	0.006	0.81	0.0	0.05	13.15	0.01	2.309	4.79	0.26	3.7	96.3	0.0	-1.72	0.64	0.84	3.97	2.8	0.004	0.84	5.0	0.05	15.82	0.00	2.213	2.71	2.02	3.0	97.0	0.0	-0.77	4.58	0.67	0.87	3.91	64458	8100	30	0	0	0	0	logfile
✔	6o2N	0609	2024-09-29	2019-02-24	3.7	3.87	—	3.8	0.006	0.93	0.0	0.06	15.00	0.01	2.266	4.97	0.55	9.7	90.3	0.0	-4.61	0.78	0.85	1.59	3.8	0.005	0.81	5.0	0.05	16.10	0.00	2.030	7.83	3.75	7.6	92.4	0.0	-2.77	0.43	0.78	0.85	1.28	72637	9218	14	0	0	0	0	logfile
✔	8iYK	35824	2024-09-30	2023-04-05	2.95	3.32	3.08	3.2	0.003	0.64	1.0	0.05	18.22	0.00	2.066	11.71	7.67	7.1	92.3	0.6	-1.67	0.78	0.87	2.43	3.2	0.004	0.77	4.0	0.05	17.84	0.00	1.964	8.45	5.45	7.1	92.5	0.4	-1.45	0.25	0.78	0.87	2.47	77370	10248	45	0	3	0	0	logfile
✔	8HiP	34825	2024-09-25	2022-11-21	2.77	2.98	2.77	3.1	0.006	0.80	5.0	0.09	13.36	0.01	1.885	10.70	0.09	2.9	97.1	0.0	-3.00	0.66	0.81	4.31	3.1	0.006	1.05	4.0	0.05	15.66	0.01	2.307	6.72	2.85	3.5	96.5	0.0	1.39	0.42	0.67	0.83	3.60	10396	1294	8	0	14	0	0	logfile
✔	5FLX	3221	2024-09-30	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	21.37	0.00	0.894	15.92	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.005	0.91	4.0	0.04	22.89	0.01	1.812	21.35	5.25	9.0	90.6	0.5	-1.74	1.52	0.48	0.81	0.67	80592	4810	40	1972	76	0	0	logfile
✔	7UEG	26474	2024-09-24	2022-03-21	4.0	4.46	4.14	4.2	0.034	0.79	6.0	0.05	12.16	0.01	0.436	24.88	0.00	9.0	90.9	0.2	-2.77	0.67	0.78	—	4.1	0.032	0.99	4.0	0.05	14.34	0.01	1.817	21.96	1.59	11.3	88.5	0.2	-3.08	1.28	0.69	0.83	—	49968	6480	36	0	0	0	0	logfile
✔	5ZDH	6917	2024-09-27	2018-02-23	3.2	3.35	—	3.3	0.016	1.32	0.0	0.07	10.62	0.01	1.598	24.89	1.42	6.2	92.2	1.6	-4.98	0.75	0.75	2.34	3.3	0.004	0.88	4.0	0.05	15.18	0.01	2.089	11.06	2.06	6.0	93.3	0.7	-1.54	0.72	0.77	0.82	1.48	66045	8715	30	0	0	0	0	logfile
✔	8UXK	42767	2024-09-28	2023-11-09	3.02	3.35	3.07	3.3	0.003	0.63	0.0	0.04	13.86	0.00	2.027	10.72	0.08	1.6	98.4	0.1	-0.24	0.55	0.83	2.62	3.3	0.004	0.67	4.0	0.04	15.69	0.00	2.181	8.39	1.45	0.9	99.1	0.0	3.65	0.90	0.55	0.84	2.20	72372	9990	37	0	0	0	0	logfile
✔	5FN1	3236	2024-09-26	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	12.98	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.006	1.10	4.0	0.04	17.40	0.01	1.887	17.86	2.20	9.8	89.3	0.9	-0.97	2.04	0.40	0.73	1.02	61308	3906	36	90	0	0	30078	logfile
✔	6X96	22102	2024-09-28	2020-06-02	3.4	4.14	3.71	4.0	0.022	1.74	0.0	0.13	11.24	0.01	2.363	0.64	0.00	2.1	97.9	0.0	1.05	0.77	0.80	3.02	4.0	0.006	1.22	4.0	0.06	13.97	0.00	1.989	9.95	2.76	3.9	96.0	0.1	0.32	2.46	0.65	0.72	2.39	18915	2322	27	0	63	0	0	logfile
✔	7V1Y	31630	2024-09-26	2021-08-07	2.82	2.93	—	2.9	0.006	0.78	8.0	0.06	13.04	0.00	2.254	2.36	0.15	2.9	97.1	0.0	1.48	0.69	0.86	3.24	2.9	0.002	0.55	4.0	0.04	16.14	0.00	2.358	3.44	1.42	3.8	96.2	0.0	1.72	0.56	0.68	0.88	3.09	12524	1588	8	0	0	0	0	logfile
✔	7N6R	24209	2024-09-26	2021-06-08	3.93	4.15	—	4.1	0.015	1.79	0.0	0.08	15.72	0.00	2.264	7.99	1.24	5.1	94.6	0.3	-3.93	0.60	0.75	0.98	4.1	0.006	1.30	4.0	0.07	17.28	0.01	2.040	13.50	4.02	5.0	94.9	0.1	-0.21	1.24	0.70	0.82	1.55	12708	1500	8	0	16	0	0	logfile
✔	7DX1	30892	2024-09-29	2021-01-18	3.1	3.22	—	3.1	0.012	1.05	0.0	0.08	18.07	0.01	1.848	23.56	13.11	10.4	86.2	3.4	-4.20	0.75	0.80	2.60	3.1	0.007	0.94	4.0	0.06	16.04	0.01	2.088	6.21	3.18	6.9	93.0	0.1	-0.97	1.36	0.77	0.87	2.49	23740	2914	28	0	71	0	0	logfile
✔	8SEU	40429	2024-09-28	2023-04-10	3.0	3.25	3.00	3.2	0.005	0.72	8.0	0.05	12.63	0.00	1.873	7.45	1.96	2.3	97.4	0.3	1.51	0.59	0.85	2.48	3.2	0.005	1.12	4.0	0.04	15.45	0.00	2.234	5.45	2.23	2.3	97.7	0.0	2.25	1.40	0.58	0.85	2.21	20576	2512	8	0	4	0	0	logfile
✔	7USF	26737	2024-09-28	2022-04-25	3.5	4.05	3.59	3.9	0.003	0.55	0.0	0.04	19.62	0.00	2.017	10.80	0.12	2.5	97.5	0.0	0.79	0.79	0.78	2.43	3.9	0.004	1.00	4.0	0.05	20.84	0.01	2.109	10.22	1.81	3.1	96.8	0.1	0.87	0.55	0.81	0.82	1.89	18988	1984	22	152	10	0	0	logfile
✔	6WBF	21588	2024-09-28	2020-03-26	2.83	2.57	—	3.0	0.007	0.83	0.0	0.04	16.59	0.01	2.183	11.63	0.38	5.0	95.0	0.0	-1.45	0.44	0.62	2.99	3.0	0.004	1.15	4.0	0.05	16.41	0.01	2.297	12.01	3.15	4.1	95.8	0.2	1.52	1.24	0.62	0.79	3.26	19712	2408	14	0	49	0	0	logfile
✔	6YRG	10889	2024-09-29	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.61	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.008	0.96	4.0	0.06	13.08	0.01	1.048	16.33	0.00	9.6	90.1	0.3	-1.40	3.40	0.77	0.56	—	21992	2736	4	0	0	0	0	logfile
✔	8oTT	17184	2024-09-26	2023-04-21	3.3	3.86	3.31	3.4	0.005	0.77	0.0	0.05	24.30	0.01	2.513	1.15	0.16	1.3	98.7	0.0	1.04	0.89	0.82	2.67	3.4	0.004	0.71	4.0	0.04	26.65	0.00	2.318	7.40	0.48	2.4	97.6	0.0	3.94	0.77	0.91	0.88	2.07	12973	859	17	288	8	0	0	logfile

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