Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NTM	12591	2024-09-25	2021-03-10	2.86	3.19	2.97	2.8	0.013	1.61	7.0	0.10	15.61	0.00	1.962	17.08	1.77	6.2	93.8	0.0	-3.56	0.98	0.97	4.63	2.8	0.004	0.57	0.0	0.05	15.99	0.00	2.041	2.82	0.84	2.3	97.7	0.0	0.01	0.92	0.99	0.98	5.37	10336	1388	8	0	8	0	0	logfile
✔	7YC8	33736	2024-09-24	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.971	60.55	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	7ADD	11724	2024-09-24	2020-09-14	4.3	7.48	—	4.2	0.003	0.58	0.0	0.05	15.54	0.00	1.993	13.15	3.45	4.2	95.8	0.0	-2.89	0.90	0.73	—	4.2	0.004	0.70	0.0	0.05	14.56	0.00	1.804	19.86	0.00	5.5	94.5	0.0	-0.58	0.75	0.96	0.87	—	51610	6330	26	89	18	15	0	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7ADB	11722	2024-09-24	2020-09-14	4.4	7.85	—	4.4	0.003	0.65	0.0	0.04	15.82	0.00	2.026	14.90	4.90	5.3	94.7	0.0	-3.41	0.89	0.69	—	4.4	0.003	0.68	0.0	0.04	14.76	0.00	1.944	17.16	0.02	4.9	95.1	0.0	-0.76	1.42	0.96	0.87	—	51330	6331	26	75	18	15	0	logfile
✔	7PTQ	13633	2024-09-27	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	23.49	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.70	0.0	0.04	26.94	0.00	2.105	38.60	0.00	0.0	0.0	0.0	—	2.74	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	7YCi	33740	2024-09-24	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.007	0.68	0.0	0.04	24.68	0.00	1.863	22.55	0.00	0.0	0.0	0.0	—	1.23	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	8A1R	15084	2024-09-25	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.004	0.73	1.0	0.05	16.24	0.00	2.545	18.40	1.63	6.6	93.4	0.0	-0.38	0.60	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7YCG	33738	2024-09-24	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.68	0.0	0.04	24.51	0.00	1.848	29.82	0.00	0.0	0.0	0.0	—	0.32	0.95	0.88	—	8661	0	3	404	4	0	0	logfile
✔	7ADC	11723	2024-09-24	2020-09-14	4.0	5.22	—	3.9	0.003	0.60	0.0	0.04	15.85	0.00	1.950	13.13	3.78	4.6	95.4	0.0	-2.77	0.90	0.75	—	3.9	0.003	0.75	0.0	0.04	16.34	0.00	1.875	16.19	1.17	4.7	95.3	0.0	-0.53	1.48	0.95	0.87	—	51565	6330	26	87	18	15	0	logfile
✔	7ADE	11725	2024-09-24	2020-09-14	4.2	6.36	—	4.1	0.003	0.59	0.0	0.04	15.51	0.00	1.954	13.53	3.12	4.6	95.3	0.0	-3.15	0.91	0.76	—	4.1	0.003	0.69	0.0	0.04	14.74	0.00	1.913	16.73	0.00	5.3	94.7	0.0	-0.82	0.80	0.95	0.87	—	51553	6315	26	92	18	15	0	logfile
✔	7NZM	12665	2024-09-25	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	14.32	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.77	0.0	0.04	15.07	0.00	2.079	11.88	0.42	2.4	97.6	0.0	0.57	1.48	0.95	0.85	0.23	9109	1157	8	0	4	0	0	logfile
✔	7PME	13530	2024-09-29	2021-09-02	2.9	3.93	2.92	3.1	0.005	0.83	3.0	0.05	15.51	0.01	1.375	4.76	0.08	0.1	99.9	0.0	-1.26	0.93	0.86	3.45	3.1	0.004	0.69	0.0	0.04	15.73	0.00	1.918	5.13	0.40	1.7	98.3	0.0	1.79	0.62	0.94	0.88	2.86	23370	2906	18	0	15	0	0	logfile
✔	7PMF	13531	2024-09-25	2021-09-02	3.4	4.29	3.46	3.3	0.010	1.00	1.0	0.06	15.34	0.01	1.731	3.78	0.09	0.2	99.8	0.0	-1.44	0.91	0.83	3.07	3.3	0.002	0.63	0.0	0.04	15.35	0.00	1.997	4.58	0.28	1.5	98.5	0.0	2.05	1.28	0.94	0.88	2.30	10125	1256	7	0	6	0	0	logfile
✔	8FoH	29349	2024-09-27	2022-12-30	4.6	4.87	4.51	4.3	0.013	1.46	4.0	0.09	13.11	0.01	1.447	3.87	0.49	2.6	97.3	0.1	-0.42	0.89	0.68	—	4.3	0.003	0.57	0.0	0.04	13.10	0.00	2.514	7.77	0.00	1.5	98.5	0.0	2.13	1.27	0.94	0.81	—	16996	2048	7	20	1	0	0	logfile
✔	8PEo	17633	2024-09-26	2023-06-14	2.69	3.21	2.84	2.7	0.005	0.77	0.0	0.05	29.82	0.01	2.201	8.09	0.14	1.9	98.1	0.0	0.99	0.92	0.88	2.79	2.8	0.004	0.63	0.0	0.04	28.23	0.00	2.435	6.75	0.84	2.3	97.7	0.0	2.52	1.39	0.94	0.92	2.79	12835	853	12	294	0	0	0	logfile
✔	8YG8	39238	2024-09-25	2024-02-26	2.97	4.08	3.08	3.2	0.003	0.58	0.0	0.04	16.02	0.00	2.190	7.99	0.00	7.5	92.4	0.1	-0.65	0.93	0.87	2.86	3.3	0.003	0.68	0.0	0.04	14.40	0.00	2.430	6.12	0.63	8.1	91.9	0.1	-0.66	1.04	0.94	0.88	2.56	11414	1395	8	0	16	0	0	logfile
✔	8BLQ	16113	2024-09-25	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.003	0.65	0.0	0.04	14.19	0.00	2.563	14.36	1.56	6.1	93.9	0.0	-1.83	1.43	0.94	0.80	1.25	9210	1220	5	0	0	0	0	logfile
✔	8FoK	29352	2024-09-28	2022-12-30	3.56	3.95	3.62	3.5	0.008	0.92	1.0	0.04	16.60	0.01	2.141	9.65	0.15	2.3	97.7	0.0	0.89	0.84	0.68	1.87	3.5	0.004	0.59	0.0	0.04	16.63	0.00	2.146	10.62	1.85	3.0	96.9	0.0	1.31	1.89	0.94	0.84	1.98	18827	2261	7	35	1	0	0	logfile
✔	8G12	29659	2024-09-25	2023-02-01	2.17	3.50	2.16	2.8	0.006	0.87	0.0	0.05	14.96	0.01	2.394	5.72	0.38	4.3	95.7	0.0	-1.26	0.93	0.93	4.11	2.8	0.003	0.56	0.0	0.04	15.35	0.01	2.547	1.97	0.29	3.1	96.9	0.0	0.69	0.31	0.94	0.95	4.93	9980	1336	4	0	0	0	0	logfile

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