Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NTM	12591	2024-09-25	2021-03-10	2.86	3.19	2.97	2.8	0.013	1.61	7.0	0.10	15.61	0.00	1.962	17.08	1.77	6.2	93.8	0.0	-3.56	0.98	0.97	4.63	2.8	0.004	0.57	0.0	0.05	15.99	0.00	2.041	2.82	0.84	2.3	97.7	0.0	0.01	0.92	0.99	0.98	5.37	10336	1388	8	0	8	0	0	logfile
✔	8G12	29659	2024-09-25	2023-02-01	2.17	3.50	2.16	2.8	0.006	0.87	0.0	0.05	14.96	0.01	2.394	5.72	0.38	4.3	95.7	0.0	-1.26	0.93	0.93	4.11	2.8	0.003	0.56	0.0	0.04	15.35	0.01	2.547	1.97	0.29	3.1	96.9	0.0	0.69	0.31	0.94	0.95	4.93	9980	1336	4	0	0	0	0	logfile
✔	8CG3	16628	2024-09-23	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.005	0.94	0.0	0.04	16.12	0.00	2.645	0.17	0.00	2.3	97.7	0.0	-4.82	0.29	0.51	0.94	7.55	3040	445	5	0	0	0	0	logfile
✔	7PTQ	13633	2024-09-27	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	23.49	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.70	0.0	0.04	26.94	0.00	2.105	38.60	0.00	0.0	0.0	0.0	—	2.74	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	8ToB	41442	2024-09-29	2023-08-03	3.14	3.34	2.61	2.9	0.002	0.45	0.0	0.04	13.68	0.00	2.194	4.63	0.00	3.1	96.9	0.1	0.69	0.78	0.93	4.49	2.9	0.003	0.52	0.0	0.04	15.04	0.00	2.408	3.56	1.52	3.0	97.0	0.0	0.95	0.26	0.79	0.94	4.34	22242	3058	44	0	0	0	0	logfile
✔	8X8o	38151	2024-09-28	2023-11-27	2.5	2.87	2.48	2.7	0.005	0.55	0.0	0.05	14.74	0.00	2.200	2.38	1.64	5.6	94.4	0.0	-1.15	0.82	0.93	5.71	2.7	0.004	0.55	0.0	0.05	14.79	0.00	2.482	1.58	1.53	6.0	94.0	0.0	-0.99	0.18	0.82	0.94	5.65	17682	2325	3	0	0	0	0	logfile
✔	8CAQ	16532	2024-09-23	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	2.7	0.008	0.72	0.0	0.05	14.17	0.00	2.529	2.05	0.30	2.5	97.5	0.0	-2.02	0.58	0.47	0.93	6.67	2870	375	5	0	0	0	0	logfile
✔	8XCS	38253	2024-09-23	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.004	0.54	0.0	0.04	16.72	0.00	2.446	4.06	1.47	1.9	98.1	0.0	1.74	0.89	0.49	0.93	5.70	3360	418	2	0	3	20	0	logfile
✔	8TEQ	41195	2024-09-24	2023-07-06	2.84	3.16	2.42	3.1	0.003	0.56	0.0	0.04	17.77	0.01	2.300	6.75	0.00	2.0	98.0	0.0	-4.35	0.66	0.92	6.41	3.1	0.004	0.65	0.0	0.05	18.66	0.00	2.567	3.29	2.31	3.9	96.1	0.0	-3.08	0.46	0.65	0.93	6.23	6705	825	30	0	0	0	0	logfile
✔	8HH7	34754	2024-09-30	2022-11-16	2.5	3.02	2.62	2.8	0.004	0.59	0.0	0.05	13.52	0.00	1.560	3.12	0.04	1.9	98.1	0.0	1.55	0.85	0.92	4.56	2.8	0.002	0.50	0.0	0.04	14.46	0.00	2.010	3.02	0.70	2.3	97.7	0.0	1.73	0.23	0.84	0.93	3.84	24250	3129	13	0	12	0	0	logfile
✔	7ZZQ	15039	2024-09-28	2022-05-26	2.6	3.53	2.62	3.0	0.002	0.46	0.0	0.04	18.37	0.00	2.094	5.12	1.18	1.9	98.1	0.0	1.31	0.88	0.83	3.23	3.0	0.004	0.79	0.0	0.04	17.76	0.00	2.367	5.84	1.03	2.4	97.5	0.0	1.59	0.74	0.91	0.93	3.10	19527	2468	46	0	0	105	0	logfile
✔	8G14	29661	2024-09-25	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.49	0.0	0.05	15.68	0.00	2.619	1.21	0.00	3.0	97.0	0.0	0.78	0.19	0.88	0.93	5.29	10020	1336	4	0	0	0	0	logfile
✔	8CGH	16643	2024-09-23	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.004	0.86	0.0	0.04	17.20	0.00	2.640	0.97	0.80	6.4	93.6	0.0	-4.90	0.93	0.53	0.93	6.66	2710	400	5	0	0	0	0	logfile
✔	8Q2L	18112	2024-09-23	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.007	0.73	0.0	0.05	19.42	0.00	2.594	3.27	2.38	1.9	98.1	0.0	-1.88	1.25	0.41	0.93	7.30	3300	432	6	0	0	0	0	logfile
✔	8HH8	34755	2024-09-30	2022-11-16	2.8	3.21	2.83	3.0	0.003	0.56	0.0	0.04	14.03	0.00	1.983	3.76	0.08	2.2	97.8	0.0	1.14	0.84	0.90	3.75	3.0	0.004	0.55	0.0	0.04	15.45	0.00	1.917	3.55	0.70	2.7	97.3	0.0	1.10	0.85	0.86	0.93	3.41	24250	3129	13	0	12	0	0	logfile
✔	7ZiR	14738	2024-09-23	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.004	0.48	0.0	0.04	12.22	0.00	2.650	0.28	0.56	2.4	97.6	0.0	-3.90	1.02	0.51	0.93	7.99	2120	255	10	0	0	50	0	logfile
✔	8BYN	16329	2024-09-23	2022-12-13	2.6	2.60	2.45	2.5	0.009	0.79	0.0	0.05	15.40	0.00	2.417	6.44	0.00	1.4	98.6	0.0	-1.93	0.45	0.92	7.24	2.5	0.005	0.58	0.0	0.05	18.63	0.00	2.614	3.08	1.01	1.4	98.6	0.0	-1.91	0.41	0.43	0.93	6.51	3564	450	10	0	6	0	0	logfile
✔	7oAE	12775	2024-09-26	2021-04-19	2.0	2.65	—	2.2	0.008	0.53	0.0	0.05	9.44	0.00	2.440	0.99	0.00	2.6	97.4	0.0	0.22	0.77	0.91	6.46	2.2	0.002	0.54	0.0	0.04	14.87	0.00	2.602	5.09	0.77	1.1	98.9	0.0	0.42	2.66	0.78	0.93	6.31	12768	1680	42	0	0	0	0	logfile
✔	7ZYJ	15025	2024-09-24	2022-05-24	2.7	3.45	2.80	3.0	0.003	0.54	0.0	0.04	13.26	0.00	2.158	7.10	0.06	3.0	97.0	0.0	0.56	0.89	0.85	4.15	3.0	0.005	0.63	1.0	0.04	15.28	0.00	2.268	5.89	1.03	2.9	97.1	0.0	1.21	1.78	0.89	0.93	3.60	49234	6362	30	0	2	0	0	logfile
✔	7KoD	22972	2024-09-27	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.79	0.00	2.412	1.44	0.36	0.6	99.4	0.0	5.22	0.82	0.87	0.93	7.98	68186	4128	48	0	0	1727	32643	logfile

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