Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZC6	14622	2024-09-25	2022-03-25	4.27	4.35	4.17	4.3	0.014	1.95	12.0	2.55	19.30	0.01	2.098	12.11	10.79	6.1	93.1	0.8	-1.59	0.66	0.74	—	4.3	0.020	3.91	0.0	0.76	14.93	0.00	1.158	10.31	0.00	4.0	96.0	0.0	-0.92	0.72	0.68	0.77	—	11428	1513	11	0	12	0	0	logfile
✔	7AWT	11930	2024-09-28	2020-11-09	2.73	3.29	—	3.2	0.012	1.12	8.0	1.95	14.80	0.01	1.618	15.63	1.58	8.0	92.0	0.0	-3.38	0.67	0.74	3.45	3.2	0.015	2.83	0.0	0.59	16.43	0.00	2.025	6.72	1.63	5.7	94.3	0.0	-0.80	1.17	0.64	0.71	2.86	18891	2375	17	0	18	125	0	logfile
✔	8oKR	16930	2024-09-23	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.55	65.0	0.43	29.67	0.04	1.662	155.51	10.71	48.3	41.7	10.0	-7.71	2.19	0.63	0.89	1.74	1608	168	24	0	0	0	0	logfile
✔	7LQF	23484	2024-09-23	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.28	240.0	0.42	26.83	0.03	1.674	199.65	28.12	58.2	40.2	1.6	-9.12	2.29	0.69	0.87	3.16	5376	512	64	0	0	0	0	logfile
✔	8B3A	15824	2024-09-23	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	5.90	24.0	0.41	22.68	0.05	1.864	283.65	44.76	66.7	4.0	29.3	-10.74	2.50	0.40	0.52	2.89	2010	210	60	0	60	0	0	logfile
✔	7LQE	23483	2024-09-23	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.149	5.04	239.0	0.38	26.17	0.02	1.722	131.22	25.69	30.6	69.1	0.3	-7.33	1.54	0.65	0.90	1.75	6048	576	72	0	0	0	0	logfile
✔	7QKZ	14058	2024-09-23	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.024	4.11	1.0	0.38	19.43	0.01	2.461	9.46	2.02	1.2	98.8	0.0	-1.87	5.43	0.33	0.63	7.02	1701	99	9	0	0	0	891	logfile
✔	7A24	11615	2024-09-24	2020-08-16	3.8	3.92	—	3.8	0.009	1.16	33.0	1.08	15.35	0.01	0.850	22.90	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.009	1.78	0.0	0.33	17.54	0.01	2.151	21.07	3.30	7.5	92.4	0.1	-1.60	1.61	0.59	0.58	0.33	49497	6253	46	0	17	0	0	logfile
✔	5LDW	4040	2024-09-24	2016-06-28	4.27	4.38	4.19	4.3	0.009	1.42	20.0	1.11	14.78	0.01	1.608	6.24	3.32	8.5	88.2	3.3	-4.87	0.69	0.73	—	4.3	0.009	1.85	0.0	0.33	12.92	0.00	2.363	11.88	0.00	8.9	90.3	0.8	-1.56	0.94	0.71	0.77	—	51181	5866	60	0	1936	0	0	logfile
✔	5o31	3731	2024-09-24	2017-05-23	4.13	4.19	—	4.1	0.008	1.37	11.0	1.11	14.05	0.01	2.512	2.82	2.22	9.3	88.3	2.4	-4.78	0.70	0.73	—	4.1	0.009	1.83	0.0	0.33	12.90	0.00	2.388	11.71	0.03	9.5	90.2	0.3	-1.51	2.17	0.70	0.75	—	52703	7006	56	0	816	0	0	logfile
✔	5LC5	4032	2024-09-24	2016-06-19	4.35	4.47	4.28	4.3	0.009	1.47	18.0	1.11	14.69	0.01	1.587	6.08	3.67	8.6	87.7	3.7	-4.81	0.69	0.71	—	4.3	0.010	1.90	0.0	0.33	13.25	0.01	2.305	15.77	0.00	11.1	88.0	0.8	-1.89	1.68	0.71	0.78	—	51718	5916	60	0	1988	0	0	logfile
✔	7QJX	14025	2024-09-26	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.004	1.21	0.0	0.31	16.12	0.01	2.414	3.25	1.79	6.1	93.9	0.0	-3.62	2.46	0.36	0.78	3.22	13860	900	12	0	0	0	7056	logfile
✔	7LQH	23486	2024-09-26	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.110	4.14	180.0	0.30	23.66	0.02	1.889	109.96	25.00	20.5	79.5	0.0	-5.87	3.62	0.65	0.87	3.05	12096	1152	144	0	0	0	0	logfile
✔	7LQG	23485	2024-09-26	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.27	170.0	0.30	23.47	0.02	1.928	112.95	25.35	17.5	82.5	0.0	-6.19	1.11	0.67	0.87	3.23	12096	1152	144	0	0	0	0	logfile
✔	7A23	11614	2024-09-26	2020-08-15	3.7	3.80	—	3.8	0.008	1.04	26.0	0.99	15.86	0.01	1.596	24.43	1.07	10.5	89.3	0.2	-4.07	0.65	0.71	1.33	3.7	0.008	1.68	0.0	0.30	17.71	0.01	2.161	21.09	3.84	8.4	91.6	0.0	-1.47	1.49	0.67	0.76	1.05	57959	7354	57	0	20	0	0	logfile
✔	6BWi	7299	2024-09-30	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.18	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.98	90.0	0.27	23.37	0.03	1.910	88.76	34.11	35.7	60.8	3.5	-8.21	2.56	0.80	0.86	1.59	23491	2484	8	0	813	0	0	logfile
✔	6V8P	21108	2024-09-27	2019-12-11	4.1	4.54	—	4.2	0.005	0.76	0.0	0.81	11.30	0.00	2.210	3.96	0.29	6.7	93.2	0.0	-2.58	0.82	0.79	—	4.2	0.007	1.43	0.0	0.26	11.67	0.00	2.511	4.23	0.00	6.9	93.1	0.0	-0.09	1.21	0.84	0.82	—	14548	2117	6	0	1	0	0	logfile
✔	7QKF	14040	2024-09-23	2021-12-17	2.83	2.46	2.72	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.26	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.06	0.0	0.25	17.20	0.01	2.613	5.03	2.31	4.2	95.8	0.0	-3.49	1.40	0.40	0.86	5.90	3783	249	6	0	0	0	1926	logfile
✔	6V93	21115	2024-09-28	2019-12-13	3.1	3.37	—	3.3	0.006	0.74	0.0	0.75	12.69	0.00	2.117	5.82	0.00	7.0	93.0	0.0	-2.84	0.78	0.84	3.32	3.3	0.007	1.29	0.0	0.24	14.64	0.00	2.288	5.30	0.95	7.3	92.7	0.0	-0.30	0.35	0.79	0.85	2.95	18105	2198	14	26	4	220	0	logfile
✔	7R4R	14315	2024-09-24	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.32	18.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.005	1.43	17.0	0.24	16.32	0.00	1.805	22.48	5.22	8.9	91.1	0.1	-2.49	1.29	0.67	0.59	-0.26	50505	3293	12	0	43	0	24171	logfile

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