Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S0T	24793	2024-09-27	2021-08-31	3.05	3.49	—	3.2	0.006	0.72	0.0	0.76	13.86	0.00	2.181	6.29	0.00	6.1	93.9	0.0	0.29	0.86	0.81	2.64	3.2	0.008	1.35	0.0	0.24	15.38	0.00	2.158	6.68	2.23	8.3	91.6	0.0	0.03	0.38	0.87	0.85	2.84	17095	2179	13	24	3	31	0	logfile
✔	7R4R	14315	2024-09-24	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.32	18.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.005	1.43	17.0	0.24	16.32	0.00	1.805	22.48	5.22	8.9	91.1	0.1	-2.49	1.29	0.67	0.59	-0.26	50505	3293	12	0	43	0	24171	logfile
✔	8TLT	41372	2024-09-28	2023-07-27	2.85	3.16	2.98	3.1	0.005	0.67	0.0	0.74	17.33	0.00	2.216	4.11	0.54	4.6	95.4	0.0	0.75	0.70	0.81	3.25	3.1	0.007	1.26	0.0	0.24	17.51	0.00	2.193	4.22	2.02	4.5	95.5	0.0	0.46	1.10	0.71	0.83	3.24	18644	2387	16	26	3	437	0	logfile
✔	7UUQ	26800	2024-09-23	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.883	46.48	13.19	67.3	30.4	2.4	-10.55	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	8TLQ	41371	2024-09-28	2023-07-27	3.53	3.90	3.69	3.8	0.004	0.63	0.0	0.72	17.38	0.00	2.253	3.95	0.13	4.0	96.0	0.0	1.03	0.79	0.81	1.92	3.8	0.007	1.24	0.0	0.23	17.80	0.00	2.224	5.12	2.91	5.6	94.4	0.0	0.36	1.11	0.81	0.84	2.15	19219	2520	14	26	3	43	0	logfile
✔	7QKH	14042	2024-09-23	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	6.5	0.004	0.96	0.0	0.22	15.38	0.00	2.563	5.81	0.56	5.7	94.3	0.0	-2.73	2.26	0.33	0.70	4.25	3105	204	6	0	0	0	1593	logfile
✔	7JSK	22457	2024-09-27	2020-08-14	3.04	3.44	—	3.4	0.011	1.16	0.0	0.20	14.76	0.01	1.439	6.57	4.74	9.2	90.6	0.2	-0.67	0.61	0.77	2.70	3.4	0.003	0.96	2.0	0.21	15.36	0.01	2.126	9.29	1.87	7.9	92.1	0.0	1.04	2.20	0.61	0.79	1.82	15036	936	4	0	8	0	7664	logfile
✔	7Q5A	13830	2024-09-27	2021-11-03	2.46	2.69	—	2.6	0.012	1.12	0.0	0.06	9.68	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.052	2.81	43.0	0.20	16.17	0.01	1.689	7.32	6.75	0.0	100.0	0.0	1.18	1.63	0.68	0.87	6.18	61600	5600	2400	0	1600	0	0	logfile
✔	6H6B	0148	2024-09-24	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.3	0.004	0.87	0.0	0.18	11.72	0.00	2.490	4.58	3.75	17.7	82.3	0.0	-3.72	1.82	0.40	0.77	3.62	8060	580	10	0	0	0	4100	logfile
✔	7ZMA	14793	2024-09-28	2022-04-19	2.9	3.20	3.03	3.2	0.003	0.89	11.0	0.17	12.20	0.00	2.013	4.62	0.00	5.5	94.5	0.0	-0.24	0.64	0.73	3.49	3.2	0.004	0.92	14.0	0.18	15.35	0.01	2.163	5.58	1.91	7.3	92.7	0.0	-0.29	0.60	0.67	0.78	3.67	18816	1214	2	0	0	0	9332	logfile
✔	8CY7	27069	2024-09-25	2022-05-23	2.9	3.84	3.06	3.3	0.003	0.76	10.0	0.17	13.02	0.00	2.018	5.28	0.26	3.7	96.1	0.1	0.96	0.83	0.76	2.16	3.3	0.004	0.79	10.0	0.17	13.07	0.00	2.249	5.36	0.50	5.4	94.5	0.1	0.35	1.22	0.84	0.79	2.43	54932	3513	21	0	74	0	26549	logfile
✔	7PKG	13471	2024-09-27	2021-08-25	3.3	2.97	3.19	3.2	0.005	0.85	0.0	0.17	13.68	0.01	2.156	4.65	0.00	5.5	94.5	0.0	-1.10	0.69	0.84	5.60	3.2	0.003	0.76	0.0	0.17	14.39	0.00	2.218	2.91	0.33	3.4	96.6	0.0	-0.73	0.57	0.70	0.86	4.78	16155	1030	15	0	10	5	7980	logfile
✔	8AZS	15770	2024-09-24	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.2	0.028	4.05	31.0	0.17	24.42	0.02	2.053	345.81	15.67	48.7	44.4	6.9	-8.17	17.49	0.18	0.16	-0.10	9036	1224	36	0	0	0	0	logfile
✔	7R4Q	14314	2024-09-24	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	16.09	0.02	1.866	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.005	1.10	8.0	0.17	15.29	0.01	1.971	20.81	1.38	7.9	92.1	0.0	-1.91	1.65	0.62	0.55	0.51	51420	3414	13	0	43	0	24182	logfile
✔	6KPE	0743	2024-09-26	2019-08-15	2.83	4.04	—	3.7	0.009	0.82	0.0	0.14	13.07	0.00	2.040	13.53	0.00	10.4	89.6	0.0	-5.24	0.83	0.84	3.18	3.5	0.005	0.85	0.0	0.16	15.85	0.00	2.276	7.79	1.40	5.5	94.5	0.0	-0.31	1.69	0.83	0.85	3.48	62184	3936	24	0	12	0	31212	logfile
✔	7E1Z	30947	2024-09-25	2021-02-04	3.2	3.39	—	3.3	0.013	1.21	0.0	0.73	28.02	0.01	1.934	13.95	1.07	6.7	92.3	1.0	-3.99	0.68	0.84	2.42	3.4	0.003	1.60	0.0	0.16	25.45	0.00	2.323	5.28	1.25	5.4	94.5	0.1	0.10	1.67	0.67	0.86	2.33	10550	1302	8	0	15	4	0	logfile
✔	7BCT	12143	2024-09-28	2020-12-21	3.37	3.33	3.31	3.4	0.009	1.15	0.0	0.15	13.35	0.01	2.299	4.43	0.00	5.7	94.3	0.0	-0.74	0.51	0.67	2.81	3.4	0.003	0.78	0.0	0.16	14.96	0.00	2.258	7.91	1.46	5.1	94.9	0.0	1.10	0.78	0.55	0.74	2.57	20091	1326	3	0	0	0	10299	logfile
✔	8iK7	35505	2024-09-23	2023-02-28	3.69	3.48	3.31	3.6	0.009	3.75	27.0	0.34	10.51	0.00	1.936	29.98	0.00	13.7	86.3	0.0	-5.90	0.27	0.76	3.67	3.6	0.051	2.58	2.0	0.15	19.79	0.01	2.121	73.21	26.67	55.4	42.3	2.4	-7.57	1.61	0.34	0.87	3.90	1488	216	24	0	0	0	0	logfile
✔	8iKB	35508	2024-09-23	2023-02-28	3.71	3.37	3.27	3.6	0.009	4.38	45.0	0.34	11.37	0.00	1.899	43.20	0.00	2.9	97.1	0.0	-5.58	0.28	0.73	2.50	3.6	0.049	3.13	0.0	0.15	19.38	0.01	2.042	87.04	21.43	52.1	44.3	3.6	-7.77	1.61	0.33	0.85	3.58	1764	252	28	0	0	0	0	logfile
✔	8iKS	35520	2024-09-23	2023-03-01	3.75	3.73	3.52	3.2	0.018	4.07	8.0	0.24	18.13	0.00	1.885	50.36	0.00	8.3	91.7	0.0	-5.59	0.34	0.66	1.82	3.2	0.032	3.03	0.0	0.15	24.79	0.01	2.274	78.19	18.75	50.0	50.0	0.0	-6.94	1.63	0.35	0.70	2.00	1024	144	16	0	0	0	0	logfile

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