Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PTL	13630	2024-09-29	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	23.55	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	27.87	0.01	1.723	77.38	0.00	0.0	0.0	0.0	—	3.53	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7TTS	26122	2024-09-28	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.67	0.0	0.04	14.03	0.00	1.769	16.72	0.12	3.4	96.5	0.1	2.42	1.03	0.69	0.41	-0.43	18793	2686	12	0	23	0	0	logfile
✔	8D6X	27225	2024-09-28	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.004	0.73	0.0	0.05	14.96	0.00	2.367	26.07	1.82	5.1	94.9	0.0	-0.27	4.66	0.82	0.62	0.13	68362	8957	41	0	0	0	0	logfile
✔	8GWB	34308	2024-09-29	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	17.30	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.82	0.0	0.04	18.12	0.01	2.100	16.91	2.65	7.8	92.1	0.1	-2.05	1.66	0.36	0.17	0.19	21879	2655	16	54	10	7	0	logfile
✔	8D9N	27267	2024-09-24	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.69	0.0	0.04	13.29	0.00	2.434	4.56	0.00	4.6	95.4	0.0	0.35	0.56	0.34	-0.06	—	7186	902	2	0	0	0	0	logfile
✔	5VZL	8749	2024-09-26	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	17.27	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.66	0.0	0.04	18.12	0.00	1.459	9.05	1.33	4.8	95.2	0.0	-0.63	1.15	0.37	0.16	0.81	13915	1451	3	115	1	0	0	logfile
✔	8GWE	34310	2024-09-29	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	18.80	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.005	0.98	1.0	0.05	18.69	0.01	1.680	19.14	3.73	9.2	90.6	0.2	-2.36	1.14	0.46	0.25	0.47	22040	2668	15	56	10	1	0	logfile
✔	6Qi8	4552	2024-09-27	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.004	0.90	0.0	0.05	17.87	0.01	2.185	14.58	2.35	7.5	92.5	0.0	-2.50	1.54	0.32	0.22	0.55	14789	1907	12	0	6	0	0	logfile
✔	8HiA	34813	2024-09-24	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.004	0.74	0.0	0.05	14.73	0.01	2.306	25.00	4.76	4.8	95.2	0.0	-5.19	12.04	0.66	0.21	—	7200	460	20	0	0	0	3660	logfile
✔	1oED	1044	2024-09-23	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.1	0.004	1.04	0.0	0.05	16.17	0.01	2.570	21.32	2.25	2.1	97.9	0.0	1.35	2.68	0.61	0.40	—	4926	636	5	0	0	0	0	logfile
✔	3JAC	6343	2024-09-27	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.07	13.28	0.01	2.047	64.31	0.00	24.4	74.1	1.6	-5.24	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	6i52	4410	2024-09-23	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.11	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.8	0.003	0.81	0.0	0.05	18.03	0.00	2.377	15.30	0.00	9.2	90.1	0.7	-2.68	3.56	0.76	0.63	—	3856	432	4	20	0	0	0	logfile
✔	8UUZ	42602	2024-09-23	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.5	0.004	0.93	0.0	0.05	16.67	0.00	2.504	33.61	3.48	6.6	93.4	0.0	-1.96	1.36	0.75	0.56	0.90	2258	300	2	0	0	0	0	logfile
✔	7W6P	32331	2024-09-24	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.5	0.004	0.79	0.0	0.05	15.92	0.00	2.503	16.77	2.44	6.3	93.7	0.0	-0.85	1.95	0.33	0.28	0.86	8408	1083	6	0	1	0	0	logfile
✔	8E5P	27917	2024-09-28	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.51	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.002	0.66	0.0	0.04	12.32	0.00	1.507	11.63	0.00	2.2	97.8	0.0	1.02	1.57	0.86	0.78	—	20038	2502	13	8	18	0	0	logfile
✔	6YRG	10889	2024-09-29	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.61	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.008	0.96	4.0	0.06	13.08	0.01	1.048	16.33	0.00	9.6	90.1	0.3	-1.40	3.40	0.77	0.56	—	21992	2736	4	0	0	0	0	logfile
✔	7PD4	13330	2024-09-24	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.9	0.003	0.82	0.0	0.04	13.41	0.00	2.381	13.24	0.00	4.1	95.9	0.0	-0.25	0.98	0.73	0.72	—	6676	842	1	0	0	0	0	logfile
✔	8RK9	19265	2024-09-23	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.8	0.003	0.77	0.0	0.05	16.84	0.01	2.538	15.49	3.53	7.1	92.9	0.0	-3.47	4.08	0.30	0.09	0.60	6138	816	6	0	0	0	0	logfile
✔	8XM7	38466	2024-09-28	2023-12-27	4.91	3.77	4.50	7.7	0.007	1.01	0.0	0.05	14.71	0.01	2.009	51.04	0.00	11.1	88.9	0.0	-2.89	0.86	0.80	—	7.7	0.004	0.77	0.0	0.05	14.79	0.01	1.989	22.88	0.00	7.1	92.9	0.0	-1.31	0.57	0.86	0.79	—	17190	2123	4	0	2	0	0	logfile
✔	8YMK	39396	2024-09-23	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile

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