Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QN7	18509	2024-09-23	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.50	0.0	0.05	18.21	0.00	2.686	2.48	0.69	6.7	93.3	0.0	-3.35	1.19	0.43	0.92	6.22	1455	190	5	0	0	0	0	logfile
✔	8P34	17383	2024-09-23	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.005	0.64	0.0	0.05	13.81	0.00	2.682	0.69	1.23	4.3	95.7	0.0	-1.79	0.21	0.28	0.88	6.57	711	94	1	0	0	0	0	logfile
✔	7RX5	24725	2024-09-24	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	12.76	0.00	2.676	2.72	0.00	0.0	100.0	0.0	5.55	0.19	0.70	0.87	2.91	9120	1160	40	0	0	0	0	logfile
✔	8GZ9	34393	2024-09-23	2022-09-26	2.62	2.44	2.40	2.4	0.003	0.69	0.0	0.06	14.01	0.00	2.670	1.93	0.00	0.3	99.7	0.0	-0.15	0.28	0.90	7.26	2.4	0.002	0.55	0.0	0.06	14.22	0.00	2.674	0.96	2.21	0.6	99.4	0.0	-0.31	0.27	0.28	0.91	8.15	2426	390	58	0	0	24	0	logfile
✔	7YAT	33719	2024-09-23	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.002	0.72	0.0	0.05	15.28	0.00	2.674	12.57	0.26	0.5	99.5	0.0	-5.12	0.36	0.63	0.90	7.32	4129	600	45	0	0	25	0	logfile
✔	6VPS	21316	2024-09-23	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.002	0.49	0.0	0.03	20.22	0.00	2.670	2.53	0.33	6.9	93.1	0.0	-3.81	1.19	0.48	0.87	6.54	2736	279	9	0	0	0	0	logfile
✔	8KF4	37198	2024-09-23	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.51	0.0	0.06	14.50	0.00	2.667	0.66	0.67	0.0	100.0	0.0	-1.07	1.20	0.39	0.91	7.60	1500	204	6	0	0	0	0	logfile
✔	8CGG	16642	2024-09-23	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.002	0.67	0.0	0.04	16.97	0.00	2.666	1.75	0.00	3.1	96.9	0.0	-4.74	0.95	0.51	0.91	7.42	2710	400	5	0	0	0	0	logfile
✔	8PKD	17735	2024-09-23	2023-06-26	2.33	2.42	2.31	2.4	0.003	0.44	0.0	0.04	15.00	0.00	2.246	3.95	0.00	2.7	97.3	0.0	1.55	0.65	0.81	4.56	2.4	0.002	0.45	0.0	0.04	17.94	0.00	2.664	3.42	0.82	1.0	99.0	0.0	2.07	1.03	0.80	0.91	4.18	4844	600	8	0	0	16	0	logfile
✔	8Vi5	43249	2024-09-24	2024-01-03	3.2	3.48	3.25	3.5	0.003	0.49	0.0	0.04	12.93	0.00	1.764	4.66	0.00	1.5	98.5	0.0	2.79	0.63	0.85	3.44	3.5	0.003	0.53	0.0	0.04	14.04	0.00	2.663	5.46	0.52	2.2	97.8	0.0	2.55	0.87	0.59	0.85	3.06	7359	924	3	0	0	0	0	logfile
✔	7ZXP	15013	2024-09-28	2022-05-22	2.39	2.72	2.35	2.5	0.002	0.42	0.0	0.04	14.73	0.00	2.030	3.46	1.17	1.1	98.9	0.0	4.20	0.72	0.87	3.52	2.6	0.003	0.43	0.0	0.04	15.66	0.00	2.659	3.27	1.85	1.1	98.9	0.0	4.59	0.91	0.64	0.90	3.42	18420	2292	12	0	0	0	0	logfile
✔	8W0R	43712	2024-09-24	2024-02-14	2.8	2.89	2.83	2.9	0.005	0.71	0.0	0.11	12.17	0.01	2.073	0.57	0.00	2.4	97.6	0.0	0.55	0.61	0.77	3.21	2.9	0.003	0.52	0.0	0.04	14.71	0.00	2.658	5.57	0.54	1.9	98.1	0.0	2.46	1.74	0.59	0.78	3.01	3556	426	4	0	2	0	0	logfile
✔	8V4N	42974	2024-09-23	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.003	0.58	0.0	0.04	17.37	0.00	2.658	1.71	1.87	2.3	97.7	0.0	0.71	1.01	0.31	0.87	3.49	2067	263	1	0	0	0	0	logfile
✔	6WL1	21815	2024-09-26	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.52	0.0	0.04	16.38	0.00	2.657	4.46	4.88	0.0	100.0	0.0	6.13	0.73	0.73	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6WYJ	21966	2024-09-23	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.60	0.0	0.04	14.47	0.00	2.656	4.76	1.60	1.5	98.5	0.0	1.96	0.60	0.64	0.80	1.44	2949	398	1	0	0	0	0	logfile
✔	8WP9	37713	2024-09-29	2023-10-09	2.49	2.89	2.62	2.9	0.005	0.95	0.0	0.06	15.19	0.01	2.315	2.53	1.00	0.9	99.1	0.0	1.51	0.64	0.73	1.41	2.8	0.003	0.62	0.0	0.05	18.67	0.00	2.655	3.81	3.50	0.9	99.1	0.0	2.38	1.29	0.72	0.88	2.51	21432	2760	24	0	0	0	0	logfile
✔	8TER	41198	2024-09-23	2023-07-06	2.59	2.80	2.25	2.8	0.007	0.89	0.0	0.05	18.43	0.01	2.289	10.67	0.00	6.1	93.9	0.0	-4.34	0.66	0.90	5.78	2.8	0.008	0.70	0.0	0.05	20.10	0.00	2.655	3.52	6.38	5.6	94.4	0.0	-3.91	0.85	0.66	0.91	6.73	5780	700	40	0	0	240	0	logfile
✔	8AZ4	15753	2024-09-23	2022-09-05	2.2	2.27	2.10	2.2	0.006	0.72	0.0	0.05	10.22	0.00	2.292	1.89	0.00	7.7	92.3	0.0	-3.94	0.57	0.88	8.31	2.2	0.004	0.72	0.0	0.05	13.37	0.00	2.655	1.89	1.25	7.7	92.3	0.0	-4.01	0.49	0.59	0.91	7.97	2280	280	30	0	10	100	0	logfile
✔	8GGU	40021	2024-09-23	2023-03-08	3.4	3.47	3.35	3.6	0.004	0.55	0.0	0.04	13.54	0.00	2.284	4.08	0.00	1.1	98.9	0.0	1.90	0.46	0.76	1.61	3.6	0.002	0.45	0.0	0.04	15.32	0.00	2.655	1.53	3.87	0.0	100.0	0.0	2.61	0.30	0.46	0.76	1.00	2053	281	2	0	1	0	0	logfile
✔	7CR1	30444	2024-09-24	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.60	0.0	0.04	16.56	0.00	2.655	6.71	2.75	2.1	97.9	0.0	2.75	1.15	0.60	0.82	1.40	8220	1000	8	0	4	0	0	logfile

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