Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TER	41198	2024-09-23	2023-07-06	2.59	2.80	2.25	2.8	0.007	0.89	0.0	0.05	18.43	0.01	2.289	10.67	0.00	6.1	93.9	0.0	-4.34	0.66	0.90	5.78	2.8	0.008	0.70	0.0	0.05	20.10	0.00	2.655	3.52	6.38	5.6	94.4	0.0	-3.91	0.85	0.66	0.91	6.73	5780	700	40	0	0	240	0	logfile
✔	8KF5	37199	2024-09-23	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.005	0.64	0.0	0.06	15.93	0.00	2.654	4.98	0.00	0.0	100.0	0.0	-0.15	0.91	0.39	0.88	8.28	1500	204	6	0	0	0	0	logfile
✔	8GZ8	34392	2024-09-23	2022-09-26	2.35	2.27	2.10	2.5	0.005	0.73	0.0	0.06	14.15	0.00	2.500	6.32	0.00	0.5	99.5	0.0	-0.71	0.43	0.88	4.53	2.6	0.004	0.61	0.0	0.06	15.00	0.00	2.653	3.79	3.57	1.1	98.9	0.0	-0.72	0.87	0.42	0.89	4.58	3336	540	71	0	0	20	0	logfile
✔	6UUR	20900	2024-09-23	2019-10-31	3.5	3.51	—	3.6	0.004	0.76	0.0	0.05	15.65	0.00	2.644	8.15	0.00	5.3	94.7	0.0	-4.46	0.56	0.78	3.10	3.6	0.004	0.85	0.0	0.05	16.82	0.00	2.653	10.14	5.60	6.3	93.7	0.0	-4.54	2.23	0.51	0.78	2.64	2770	400	10	0	0	0	0	logfile
✔	7CR2	30445	2024-09-24	2020-08-12	3.2	3.42	—	3.6	0.014	0.98	0.0	0.05	16.20	0.00	2.052	39.29	0.48	3.6	96.4	0.0	-2.81	0.58	0.80	2.35	3.6	0.003	0.61	0.0	0.04	17.50	0.00	2.652	5.70	3.45	3.3	96.7	0.0	2.28	0.69	0.55	0.79	2.09	8276	1004	8	0	4	0	0	logfile
✔	7ZiR	14738	2024-09-23	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.004	0.48	0.0	0.04	12.22	0.00	2.650	0.28	0.56	2.4	97.6	0.0	-3.90	1.02	0.51	0.93	7.99	2120	255	10	0	0	50	0	logfile
✔	8FRW	29409	2024-09-27	2023-01-09	2.92	3.40	2.85	3.2	0.005	0.77	0.0	0.05	13.23	0.01	2.032	2.81	0.11	1.5	98.5	0.0	0.72	0.80	0.84	2.23	3.2	0.002	0.57	0.0	0.04	14.19	0.00	2.649	2.42	1.03	2.0	98.0	0.0	1.32	0.59	0.80	0.86	3.06	16680	1975	15	0	20	5	0	logfile
✔	9BC6	44425	2024-09-27	2024-04-07	2.5	2.14	2.43	2.4	0.012	1.77	0.0	0.09	12.25	0.01	2.247	2.87	0.56	2.7	97.3	0.0	-0.64	0.53	0.77	6.12	2.4	0.002	0.54	0.0	0.04	14.67	0.00	2.649	4.57	0.35	1.7	98.3	0.0	2.72	0.48	0.62	0.84	4.01	14972	1936	8	0	12	0	0	logfile
✔	8PKF	17737	2024-09-23	2023-06-26	2.3673	1.91	2.30	2.6	0.013	1.73	0.0	0.12	11.30	0.01	2.355	0.12	0.00	2.3	97.7	0.0	-2.77	0.43	0.75	4.64	2.6	0.004	0.62	0.0	0.05	16.55	0.00	2.646	5.92	2.56	4.5	95.5	0.0	-2.25	1.95	0.53	0.84	4.83	4308	552	6	0	0	0	0	logfile
✔	7F29	31428	2024-09-23	2021-06-10	3.1	3.08	—	3.2	0.014	1.07	0.0	0.06	14.68	0.00	2.305	11.88	0.00	14.3	85.7	0.0	-3.96	0.42	0.83	5.02	3.2	0.002	0.54	0.0	0.05	14.37	0.00	2.646	1.70	0.00	9.5	90.5	0.0	-1.94	1.56	0.41	0.83	5.57	1794	222	18	0	18	0	0	logfile
✔	8FMY	29300	2024-09-25	2022-12-26	2.66	3.65	2.84	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.034	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.003	0.59	0.0	0.04	14.13	0.00	2.646	1.24	0.46	3.4	96.6	0.0	0.97	1.10	0.83	0.83	3.58	9597	1260	3	0	0	0	0	logfile
✔	8CG3	16628	2024-09-23	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.005	0.94	0.0	0.04	16.12	0.00	2.645	0.17	0.00	2.3	97.7	0.0	-4.82	0.29	0.51	0.94	7.55	3040	445	5	0	0	0	0	logfile
✔	6TUQ	10594	2024-09-27	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.69	0.0	0.04	12.36	0.00	2.645	9.32	0.44	0.0	100.0	0.0	-0.22	1.65	0.69	0.88	1.06	16100	2300	50	0	0	0	0	logfile
✔	7QiG	13989	2024-09-23	2021-12-14	2.7	2.81	—	2.8	0.005	0.69	0.0	0.05	14.67	0.01	2.138	2.72	0.00	8.7	91.3	0.0	-4.18	0.37	0.86	6.92	2.8	0.004	0.68	0.0	0.05	17.77	0.00	2.645	5.28	2.32	10.0	90.0	0.0	-4.20	0.56	0.38	0.87	5.56	3213	396	3	0	0	0	0	logfile
✔	8GGM	40013	2024-09-23	2023-03-08	3.2	3.34	3.12	3.3	0.004	0.54	0.0	0.04	13.21	0.00	2.297	2.30	0.00	1.4	98.6	0.0	2.21	0.53	0.88	3.55	3.3	0.003	0.49	0.0	0.04	14.72	0.00	2.644	1.84	1.79	0.7	99.3	0.0	2.73	0.26	0.52	0.88	2.56	2211	287	2	0	1	0	0	logfile
✔	7F6V	31482	2024-09-23	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	13.91	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.63	0.0	0.04	17.38	0.00	2.644	8.93	2.46	3.9	96.1	0.0	4.61	0.84	0.60	0.77	1.07	5314	626	4	0	2	0	0	logfile
✔	8iWE	35765	2024-09-23	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.7	0.002	0.59	0.0	0.04	15.53	0.00	2.644	2.98	1.42	3.4	96.6	0.0	1.66	1.01	0.62	0.85	2.29	2236	296	2	0	1	0	0	logfile
✔	9JA0	61286	2024-09-28	2024-08-23	3.14	3.38	3.16	3.4	0.003	0.67	0.0	0.04	11.92	0.01	1.961	8.89	0.00	2.8	97.2	0.0	-4.28	0.75	0.86	3.05	3.4	0.003	0.53	0.0	0.04	14.29	0.00	2.643	4.79	1.10	4.6	95.4	0.0	0.91	0.94	0.72	0.85	2.72	19716	2628	12	0	0	0	0	logfile
✔	8JEY	36203	2024-09-23	2023-05-16	2.6	2.46	2.42	2.7	0.004	0.75	0.0	0.06	11.67	0.00	2.339	4.75	0.00	4.3	95.7	0.0	-4.60	0.41	0.80	6.81	2.7	0.004	0.65	0.0	0.05	16.57	0.00	2.643	1.74	2.24	5.7	94.3	0.0	-3.40	0.45	0.44	0.83	6.71	3060	432	6	0	0	0	0	logfile
✔	8oT1	17166	2024-09-23	2023-04-20	2.59	3.30	2.25	3.4	0.013	2.40	0.0	0.13	17.35	0.01	2.477	0.00	0.00	0.0	100.0	0.0	-3.37	0.47	0.69	6.48	3.4	0.004	0.93	0.0	0.05	16.54	0.00	2.643	9.86	2.78	5.1	94.9	0.0	-1.78	1.53	0.38	0.72	5.29	2460	336	12	0	0	0	0	logfile

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