Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZV	24779	2024-09-23	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.35	0.0	0.03	15.93	0.00	2.430	3.69	1.01	0.0	100.0	0.0	5.97	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	8CZi	27098	2024-09-23	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✔	7RZR	24775	2024-09-23	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.005	0.40	0.0	0.03	15.17	0.00	2.631	4.03	0.35	0.0	100.0	0.0	5.91	0.32	0.82	0.83	3.51	2448	324	6	0	0	0	0	logfile
✔	8KEW	37170	2024-09-23	2023-08-13	3.3	2.65	2.55	3.4	0.010	0.84	0.0	0.07	14.46	0.00	2.387	8.30	0.00	3.1	96.9	0.0	-3.87	0.36	0.85	5.24	3.4	0.004	0.62	0.0	0.06	16.66	0.00	2.628	2.66	0.67	0.0	100.0	0.0	-0.86	0.39	0.33	0.84	6.28	1500	204	6	0	0	0	0	logfile
✔	8oH2	16876	2024-09-23	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.002	0.53	0.0	0.05	17.80	0.00	2.248	1.22	2.31	0.0	100.0	0.0	-2.06	0.53	0.49	0.88	5.88	3702	468	102	0	72	30	0	logfile
✔	8GGU	40021	2024-09-23	2023-03-08	3.4	3.47	3.35	3.6	0.004	0.55	0.0	0.04	13.54	0.00	2.284	4.08	0.00	1.1	98.9	0.0	1.90	0.46	0.76	1.61	3.6	0.002	0.45	0.0	0.04	15.32	0.00	2.655	1.53	3.87	0.0	100.0	0.0	2.61	0.30	0.46	0.76	1.00	2053	281	2	0	1	0	0	logfile
✔	8KF5	37199	2024-09-23	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.005	0.64	0.0	0.06	15.93	0.00	2.654	4.98	0.00	0.0	100.0	0.0	-0.15	0.91	0.39	0.88	8.28	1500	204	6	0	0	0	0	logfile
✔	7RZU	24778	2024-09-23	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.48	0.0	0.03	15.61	0.00	2.626	4.66	1.40	0.0	100.0	0.0	5.29	0.48	0.80	0.81	1.95	2439	324	6	0	0	0	0	logfile
✔	6TUQ	10594	2024-09-27	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.69	0.0	0.04	12.36	0.00	2.645	9.32	0.44	0.0	100.0	0.0	-0.22	1.65	0.69	0.88	1.06	16100	2300	50	0	0	0	0	logfile
✔	7RX5	24725	2024-09-24	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	12.76	0.00	2.676	2.72	0.00	0.0	100.0	0.0	5.55	0.19	0.70	0.87	2.91	9120	1160	40	0	0	0	0	logfile
✔	8AZ1	15729	2024-09-23	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.52	0.0	0.05	12.66	0.00	1.827	2.57	0.00	0.0	100.0	0.0	-2.20	0.43	0.45	0.83	5.69	1830	250	20	0	10	0	0	logfile
✔	7RX4	24724	2024-09-26	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.004	0.57	0.0	0.04	16.57	0.00	2.577	4.75	3.97	0.0	100.0	0.0	5.73	0.46	0.62	0.81	0.94	13560	1740	60	0	0	0	0	logfile
✔	8oTF	17177	2024-09-23	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.005	0.62	0.0	0.05	16.00	0.00	2.525	5.08	0.72	0.0	100.0	0.0	-1.06	0.45	0.43	0.90	5.83	1350	186	6	0	0	0	0	logfile
✔	7QV6	14168	2024-09-23	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.41	0.0	0.06	12.08	0.00	2.506	1.45	0.00	0.0	100.0	0.0	0.74	0.42	0.41	0.86	6.38	4842	306	18	0	0	0	2556	logfile
✔	6WKX	21812	2024-09-26	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.70	0.0	0.04	16.87	0.00	2.498	5.84	0.17	0.0	100.0	0.0	4.63	1.00	0.77	0.88	—	12915	1575	105	0	0	0	0	logfile
✔	7Q5A	13830	2024-09-27	2021-11-03	2.46	2.69	—	2.6	0.012	1.12	0.0	0.06	9.68	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.052	2.81	43.0	0.20	16.17	0.01	1.689	7.32	6.75	0.0	100.0	0.0	1.18	1.63	0.68	0.87	6.18	61600	5600	2400	0	1600	0	0	logfile
✔	7UGD	26487	2024-09-23	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.003	0.55	0.0	0.04	14.56	0.00	2.236	3.96	1.25	0.0	100.0	0.0	3.02	0.47	0.50	0.85	1.70	3079	415	2	0	3	0	0	logfile
✔	8KF4	37198	2024-09-23	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.51	0.0	0.06	14.50	0.00	2.667	0.66	0.67	0.0	100.0	0.0	-1.07	1.20	0.39	0.91	7.60	1500	204	6	0	0	0	0	logfile
✔	6WL1	21815	2024-09-26	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.52	0.0	0.04	16.38	0.00	2.657	4.46	4.88	0.0	100.0	0.0	6.13	0.73	0.73	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	7RZT	24777	2024-09-23	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.1	0.003	0.32	0.0	0.03	15.49	0.00	2.612	5.44	0.00	0.0	100.0	0.0	6.18	0.22	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile

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