Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KEW	37170	2024-09-23	2023-08-13	3.3	2.65	2.55	3.4	0.010	0.84	0.0	0.07	14.46	0.00	2.387	8.30	0.00	3.1	96.9	0.0	-3.87	0.36	0.85	5.24	3.4	0.004	0.62	0.0	0.06	16.66	0.00	2.628	2.66	0.67	0.0	100.0	0.0	-0.86	0.39	0.33	0.84	6.28	1500	204	6	0	0	0	0	logfile
✔	8oTF	17177	2024-09-23	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.005	0.62	0.0	0.05	16.00	0.00	2.525	5.08	0.72	0.0	100.0	0.0	-1.06	0.45	0.43	0.90	5.83	1350	186	6	0	0	0	0	logfile
✔	8PPo	17806	2024-09-23	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile
✔	6WKX	21812	2024-09-26	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.70	0.0	0.04	16.87	0.00	2.498	5.84	0.17	0.0	100.0	0.0	4.63	1.00	0.77	0.88	—	12915	1575	105	0	0	0	0	logfile
✔	8KF5	37199	2024-09-23	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.005	0.64	0.0	0.06	15.93	0.00	2.654	4.98	0.00	0.0	100.0	0.0	-0.15	0.91	0.39	0.88	8.28	1500	204	6	0	0	0	0	logfile
✔	7RZU	24778	2024-09-23	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.48	0.0	0.03	15.61	0.00	2.626	4.66	1.40	0.0	100.0	0.0	5.29	0.48	0.80	0.81	1.95	2439	324	6	0	0	0	0	logfile
✔	8CZi	27098	2024-09-23	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✔	6WL9	21818	2024-09-29	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.82	0.0	0.04	14.43	0.00	2.293	12.95	0.00	0.1	99.9	0.0	3.18	1.41	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	8PoP	17794	2024-09-24	2023-07-05	3.0	2.77	2.97	3.0	0.009	1.44	0.0	0.07	20.03	0.01	2.277	3.16	0.12	0.7	99.3	0.0	-0.51	0.68	0.84	2.21	3.0	0.003	0.60	0.0	0.03	21.89	0.00	2.436	4.65	2.27	0.1	99.9	0.0	3.98	1.36	0.71	0.83	1.54	8929	953	11	56	0	0	0	logfile
✔	6WL0	21814	2024-09-25	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	1.00	0.0	0.04	14.71	0.00	2.340	20.05	0.18	0.1	99.9	0.0	0.45	1.64	0.79	0.86	—	11480	1476	41	0	0	0	0	logfile
✔	6L3V	0827	2024-09-28	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	24.54	0.01	2.031	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.59	0.0	0.03	16.78	0.00	2.464	1.80	1.92	0.1	99.9	0.0	2.53	1.04	0.55	0.84	2.55	19416	1206	12	0	6	0	9528	logfile
✔	8FAi	28957	2024-09-24	2022-11-27	3.0	2.58	3.05	2.7	0.011	1.63	0.0	0.04	15.88	0.00	2.395	4.13	0.00	0.0	100.0	0.0	3.16	0.53	0.80	3.27	2.6	0.004	0.64	0.0	0.04	15.87	0.00	2.225	5.64	6.67	0.1	99.9	0.0	3.84	2.69	0.54	0.83	1.88	7845	1020	25	0	15	0	0	logfile
✔	6WKY	21813	2024-09-24	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.1	0.004	0.92	0.0	0.04	15.81	0.00	2.361	15.58	0.00	0.2	99.8	0.0	-1.18	2.30	0.75	0.86	—	9140	1160	40	0	0	0	0	logfile
✔	8Q2J	18109	2024-09-23	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.005	0.65	0.0	0.05	17.45	0.00	2.433	4.07	0.50	0.2	99.8	0.0	-2.03	1.55	0.43	0.90	7.38	3507	462	6	0	0	0	0	logfile
✔	7UGV	26497	2024-09-23	2022-03-25	2.94	3.59	2.94	3.4	0.003	0.57	0.0	0.04	9.13	0.00	2.111	3.29	0.00	0.7	99.3	0.0	2.34	0.50	0.85	4.24	3.4	0.003	0.60	0.0	0.04	13.30	0.00	2.267	4.08	1.54	0.2	99.8	0.0	3.64	1.29	0.51	0.87	2.81	3107	418	2	0	3	0	0	logfile
✔	7XNH	33315	2024-09-28	2022-04-28	3.1	2.98	2.73	2.9	0.006	1.12	0.0	0.05	13.57	0.01	2.144	6.68	0.61	0.6	99.4	0.0	-0.23	0.72	0.87	4.77	2.9	0.003	0.52	0.0	0.04	14.05	0.00	2.608	4.18	0.87	0.2	99.8	0.0	2.68	0.98	0.73	0.85	3.37	19224	2172	24	0	132	0	0	logfile
✔	8Q2K	18111	2024-09-24	2023-08-02	2.88	2.65	2.79	2.8	0.011	1.80	0.0	0.07	10.49	0.01	2.538	0.43	0.00	4.1	95.9	0.0	-1.81	0.28	0.75	5.37	2.8	0.002	0.50	0.0	0.05	17.14	0.00	2.574	0.28	1.26	0.2	99.8	0.0	-1.54	3.23	0.37	0.85	4.70	7032	450	6	0	0	0	3588	logfile
✔	7T2E	25611	2024-09-23	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.19	0.00	2.592	1.92	1.57	0.3	99.7	0.0	0.56	0.13	0.36	0.86	4.71	2390	312	2	0	0	0	0	logfile
✔	7LRC	23494	2024-09-24	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	8.07	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.80	0.00	2.002	5.98	0.60	0.3	99.7	0.0	3.60	1.21	0.76	0.85	2.95	6202	762	6	0	6	0	0	logfile
✔	7Q66	13853	2024-09-23	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.77	0.0	0.05	16.37	0.00	2.516	11.85	11.07	0.3	99.7	0.0	-4.14	0.68	0.62	0.88	4.12	4807	682	22	0	0	0	0	logfile

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