Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B3A	15824	2024-09-23	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	5.90	24.0	0.41	22.68	0.05	1.864	283.65	44.76	66.7	4.0	29.3	-10.74	2.50	0.40	0.52	2.89	2010	210	60	0	60	0	0	logfile
✔	8oKR	16930	2024-09-23	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.55	65.0	0.43	29.67	0.04	1.662	155.51	10.71	48.3	41.7	10.0	-7.71	2.19	0.63	0.89	1.74	1608	168	24	0	0	0	0	logfile
✔	8AZS	15770	2024-09-24	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.2	0.028	4.05	31.0	0.17	24.42	0.02	2.053	345.81	15.67	48.7	44.4	6.9	-8.17	17.49	0.18	0.16	-0.10	9036	1224	36	0	0	0	0	logfile
✔	8iY7	35816	2024-09-23	2023-04-04	3.71	3.66	3.44	3.6	0.019	4.84	30.0	0.35	18.12	0.00	1.763	38.65	0.00	18.1	81.9	0.0	-5.43	0.30	0.58	2.90	3.5	0.024	3.40	0.0	0.11	26.86	0.01	2.168	45.90	16.67	41.7	51.4	6.9	-6.77	2.44	0.30	0.57	1.40	1464	216	24	0	0	0	0	logfile
✔	3J2P	5499	2024-09-25	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.50	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.87	0.0	0.04	17.83	0.00	2.200	68.15	9.85	17.9	78.3	3.7	-4.25	0.86	0.38	0.72	0.97	9890	1134	8	0	6	0	1086	logfile
✔	8iKB	35508	2024-09-23	2023-02-28	3.71	3.37	3.27	3.6	0.009	4.38	45.0	0.34	11.37	0.00	1.899	43.20	0.00	2.9	97.1	0.0	-5.58	0.28	0.73	2.50	3.6	0.049	3.13	0.0	0.15	19.38	0.01	2.042	87.04	21.43	52.1	44.3	3.6	-7.77	1.61	0.33	0.85	3.58	1764	252	28	0	0	0	0	logfile
✔	6BWi	7299	2024-09-30	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.18	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.98	90.0	0.27	23.37	0.03	1.910	88.76	34.11	35.7	60.8	3.5	-8.21	2.56	0.80	0.86	1.59	23491	2484	8	0	813	0	0	logfile
✔	8oL2	16942	2024-09-23	2023-03-30	3.0	3.17	1.54	3.3	0.004	0.45	0.0	0.05	9.08	0.00	2.275	10.00	4.35	3.4	96.6	0.0	-2.34	0.48	0.91	5.22	3.3	0.004	0.68	0.0	0.05	15.53	0.00	2.528	2.83	6.96	2.1	94.5	3.4	-3.15	0.45	0.43	0.90	5.78	2260	310	10	0	0	0	0	logfile
✔	3LoS	5137	2024-09-26	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.20	0.0	0.05	15.74	0.01	2.369	22.62	0.00	19.4	77.4	3.2	-4.64	1.35	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	8iZZ	35878	2024-09-23	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.52	1.0	0.14	26.99	0.01	2.261	37.55	25.00	54.5	42.4	3.0	-6.96	3.53	0.30	0.53	-0.29	1342	198	22	0	0	0	0	logfile
✔	6JXA	9892	2024-09-26	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.006	1.12	0.0	0.05	11.68	0.01	2.387	23.91	0.00	16.8	80.2	2.9	-2.98	0.96	0.65	0.60	—	14100	2244	1	0	0	0	0	logfile
✔	8iK7	35505	2024-09-23	2023-02-28	3.69	3.48	3.31	3.6	0.009	3.75	27.0	0.34	10.51	0.00	1.936	29.98	0.00	13.7	86.3	0.0	-5.90	0.27	0.76	3.67	3.6	0.051	2.58	2.0	0.15	19.79	0.01	2.121	73.21	26.67	55.4	42.3	2.4	-7.57	1.61	0.34	0.87	3.90	1488	216	24	0	0	0	0	logfile
✔	7UUQ	26800	2024-09-23	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.883	46.48	13.19	67.3	30.4	2.4	-10.55	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	7XYM	33522	2024-09-26	2022-06-01	3.3	3.70	3.42	3.6	0.009	1.58	6.0	0.07	14.87	0.01	1.028	29.59	0.49	25.5	71.6	2.9	-6.19	0.71	0.74	1.93	3.6	0.004	1.03	0.0	0.05	16.52	0.01	2.132	19.03	1.29	23.9	74.2	1.9	-4.60	1.43	0.69	0.78	2.13	11436	1464	3	0	0	0	0	logfile
✔	3JBR	6475	2024-09-27	2015-09-29	4.2	4.39	—	4.2	0.009	1.31	0.0	0.06	11.09	0.00	1.419	19.19	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.003	0.73	0.0	0.04	10.65	0.00	2.292	9.54	0.09	10.0	88.3	1.8	-0.34	2.04	0.65	0.69	—	16467	2148	8	0	385	0	0	logfile
✔	6JXC	9893	2024-09-27	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.77	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.81	0.0	0.04	12.05	0.00	2.429	8.21	0.00	11.6	86.6	1.8	0.01	1.00	0.55	0.69	—	15270	2345	1	0	0	0	0	logfile
✔	6JSi	9882	2024-09-27	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.004	1.03	0.0	0.05	13.24	0.01	2.404	14.15	0.00	24.1	74.2	1.7	-4.86	0.63	0.63	0.70	—	62820	5844	15	0	4044	0	0	logfile
✔	7LQF	23484	2024-09-23	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.28	240.0	0.42	26.83	0.03	1.674	199.65	28.12	58.2	40.2	1.6	-9.12	2.29	0.69	0.87	3.16	5376	512	64	0	0	0	0	logfile
✔	3J06	5185	2024-09-26	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.60	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.3	0.004	0.89	1.0	0.04	20.14	0.01	2.278	13.90	4.74	7.2	91.2	1.6	-2.59	1.24	0.55	0.78	2.12	62916	7595	98	147	0	0	0	logfile
✔	3JAC	6343	2024-09-27	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.07	13.28	0.01	2.047	64.31	0.00	24.4	74.1	1.6	-5.24	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile

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