Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JoU	36462	2024-09-26	2023-06-08	4.1	6.13	3.95	3.9	0.004	0.83	0.0	0.05	12.09	0.01	0.759	16.82	0.49	7.7	90.4	1.9	-1.54	0.17	0.37	—	3.1	0.003	0.72	0.0	0.04	11.95	0.00	2.407	17.46	0.00	8.3	90.0	1.6	-1.66	2.31	0.23	0.86	—	62425	8135	70	0	590	0	0	logfile
✔	5J8V	8073	2024-09-29	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.004	0.98	0.0	0.04	9.14	0.00	2.297	6.53	0.32	12.7	85.8	1.5	-1.03	0.82	0.75	0.75	—	73616	13812	4	0	0	0	0	logfile
✔	7ASK	11895	2024-09-26	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.17	2.0	0.05	15.44	0.01	2.020	15.71	0.08	17.8	80.7	1.5	-3.06	1.29	0.18	0.61	—	12285	1523	2	0	2	0	0	logfile
✔	3J80	2764	2024-09-30	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	26.05	0.01	1.747	9.35	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.87	0.0	0.04	24.84	0.01	1.724	19.47	6.10	11.3	87.3	1.4	-1.93	1.59	0.78	0.82	0.84	77716	5039	41	1779	70	0	0	logfile
✔	4UiS	2974	2024-09-25	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-1.97	0.50	0.56	—	4.4	0.004	0.84	0.0	0.04	12.18	0.00	2.476	12.80	0.00	9.5	89.1	1.3	-1.94	1.66	0.55	0.74	—	8518	791	10	0	458	0	0	logfile
✔	5X6o	6708	2024-09-28	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.05	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.003	0.80	0.0	0.04	14.91	0.00	2.354	8.08	2.76	8.2	90.5	1.3	-0.82	0.81	0.62	0.76	1.03	19309	2701	2	0	0	0	0	logfile
✔	8YMK	39396	2024-09-23	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✔	7JLX	22383	2024-09-23	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.005	0.94	0.0	0.05	8.03	0.01	2.232	3.80	0.00	17.7	81.1	1.2	-3.30	2.46	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6FU8	4319	2024-09-23	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.76	0.0	0.04	15.90	0.00	2.426	9.53	0.00	8.8	90.0	1.2	-2.74	3.88	0.23	0.62	0.61	1364	82	1	0	0	0	711	logfile
✔	6ZH3	11212	2024-09-24	2020-06-20	3.2	3.36	3.25	3.3	0.008	0.98	0.0	0.05	14.14	0.00	2.307	3.61	0.64	2.4	96.4	1.2	-6.47	0.73	0.80	1.66	3.3	0.004	0.71	0.0	0.04	17.94	0.00	2.382	8.98	2.87	2.5	96.3	1.2	1.06	0.73	0.77	0.85	0.84	49716	6120	36	0	0	0	0	logfile
✔	8JYS	36730	2024-09-23	2023-07-03	4.5	4.28	3.75	4.3	0.004	0.96	0.0	0.05	17.51	0.01	2.197	20.35	1.88	12.7	86.1	1.2	-3.49	0.67	0.71	—	4.3	0.004	0.82	0.0	0.05	13.23	0.01	2.538	15.81	0.27	15.1	83.8	1.2	-3.34	1.19	0.68	0.72	—	3522	441	4	0	0	0	0	logfile
✔	8iKP	35519	2024-09-23	2023-02-28	2.98	2.59	2.85	3.0	0.013	1.99	2.0	0.05	15.08	0.00	1.973	20.34	0.00	15.6	84.4	0.0	-7.03	0.26	0.65	5.92	3.0	0.041	3.25	2.0	0.13	21.89	0.01	2.252	13.40	11.72	35.6	63.1	1.2	-6.55	2.00	0.32	0.77	3.52	2048	288	32	0	0	0	0	logfile
✔	5G2X	3331	2024-09-28	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.06	0.0	0.05	25.06	0.01	1.903	37.36	5.67	23.3	75.6	1.1	-4.82	2.36	0.80	0.66	0.87	19072	487	3	704	0	0	0	logfile
✔	5Li4	4052	2024-09-28	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	14.11	0.01	2.275	24.65	0.00	15.2	83.7	1.1	-3.90	4.20	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	5A8L	3099	2024-09-26	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	21.13	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.004	0.77	0.0	0.04	22.97	0.01	2.453	13.44	5.69	11.1	87.8	1.1	-2.47	1.86	0.23	0.62	0.61	12264	624	9	347	0	0	0	logfile
✔	9B34	44125	2024-09-23	2024-03-18	3.58	3.87	3.58	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.006	1.49	1.0	0.06	16.83	0.01	2.041	20.49	6.17	23.0	76.0	1.1	-4.29	2.01	0.72	0.73	0.92	3619	474	4	0	4	0	0	logfile
✔	3J7A	2660	2024-09-28	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	24.28	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.005	0.77	2.0	0.04	22.83	0.01	1.942	14.65	4.57	7.7	91.1	1.1	-1.52	2.47	0.39	0.77	0.98	68866	4106	35	1682	69	0	0	logfile
✔	7YiH	33859	2024-09-29	2022-07-16	3.5	3.85	3.58	3.8	0.004	0.78	0.0	0.05	14.23	0.01	2.066	16.72	0.00	13.9	85.0	1.1	-2.65	0.61	0.68	1.55	3.8	0.004	0.79	0.0	0.05	16.62	0.01	2.449	12.74	2.90	13.4	85.5	1.1	-2.29	0.95	0.63	0.72	1.62	21321	2640	8	0	5	4	0	logfile
✔	7YiJ	33860	2024-09-29	2022-07-16	3.8	4.24	3.93	4.1	0.004	0.92	0.0	0.05	14.45	0.01	2.135	19.50	0.00	13.3	85.3	1.4	-2.71	0.57	0.71	1.54	4.1	0.004	0.80	0.0	0.05	17.22	0.00	2.509	16.06	2.94	13.1	85.8	1.1	-2.09	0.81	0.58	0.69	1.61	21313	2640	5	0	1	0	0	logfile
✔	6BQW	7134	2024-09-28	2017-11-28	4.2	4.44	—	4.3	0.016	1.28	0.0	0.07	13.92	0.01	2.307	8.25	0.00	10.3	83.9	5.9	-3.51	0.73	0.68	—	4.3	0.003	0.82	0.0	0.05	14.84	0.00	2.365	18.18	0.00	12.3	86.6	1.1	-2.02	1.78	0.79	0.80	—	19953	2475	18	0	9	0	0	logfile

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