Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oSM	20186	2024-09-23	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.004	1.05	0.0	0.06	15.05	0.00	2.533	19.00	10.24	23.3	76.7	0.0	-4.94	1.14	0.44	0.74	3.43	4100	600	10	0	0	0	0	logfile
✔	6oSL	20185	2024-09-23	2019-05-01	3.0	3.04	—	3.0	0.010	1.06	0.0	0.07	13.47	0.00	2.308	12.61	2.44	12.3	87.7	0.0	-4.40	0.45	0.79	1.34	3.0	0.006	0.85	0.0	0.06	14.36	0.00	2.451	10.80	10.00	10.2	89.8	0.0	-3.31	0.39	0.45	0.80	2.65	4060	590	10	0	0	0	0	logfile
✔	7C1D	30269	2024-09-23	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.67	0.0	0.05	15.65	0.00	2.485	13.97	9.90	19.0	81.0	0.0	-4.97	2.81	0.39	0.75	3.89	2034	306	6	0	0	0	0	logfile
✔	3J2P	5499	2024-09-25	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.50	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.87	0.0	0.04	17.83	0.00	2.200	68.15	9.85	17.9	78.3	3.7	-4.25	0.86	0.38	0.72	0.97	9890	1134	8	0	6	0	1086	logfile
✔	8X7Q	38107	2024-09-23	2023-11-24	2.7	2.32	2.42	3.3	0.014	1.60	0.0	0.08	14.72	0.01	2.275	17.91	0.00	9.4	90.6	0.0	-4.07	0.18	0.24	0.92	3.0	0.005	0.79	0.0	0.05	17.61	0.00	2.605	9.89	9.74	6.8	93.2	0.0	-3.50	2.15	0.48	0.86	2.75	3936	550	14	0	4	0	0	logfile
✔	6W8P	21577	2024-09-24	2020-03-21	3.6	4.05	—	4.0	0.004	0.76	0.0	0.04	18.04	0.00	2.236	14.92	10.89	10.4	89.6	0.0	-3.47	0.57	0.80	0.57	3.9	0.004	0.79	0.0	0.04	18.35	0.00	2.408	12.52	9.60	9.6	90.4	0.0	-0.11	1.53	0.57	0.79	0.78	6509	844	4	0	3	0	0	logfile
✔	8oL6	16952	2024-09-23	2023-03-30	3.8	3.75	2.68	3.8	0.004	0.56	0.0	0.05	9.68	0.00	2.255	9.57	0.00	3.4	96.6	0.0	-2.28	0.46	0.86	5.96	3.8	0.004	0.62	0.0	0.05	16.26	0.00	2.567	10.43	9.57	5.9	93.4	0.7	-2.62	1.12	0.45	0.86	4.71	2260	310	10	0	0	0	0	logfile
✔	8A06	15051	2024-09-23	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.62	0.0	0.05	17.34	0.00	2.613	4.67	9.49	4.1	95.9	0.0	-1.14	0.41	0.26	0.79	—	1185	147	1	0	0	0	0	logfile
✔	6TEA	10478	2024-09-29	2019-11-11	3.89	4.22	—	4.0	0.008	1.34	0.0	0.08	12.64	0.01	2.273	14.75	0.00	11.9	88.1	0.0	-4.86	0.89	0.84	1.48	3.9	0.005	1.02	0.0	0.05	16.63	0.00	2.459	23.58	9.18	8.6	91.4	0.0	-2.75	1.45	0.91	0.86	1.30	23328	3120	24	0	0	0	0	logfile
✔	7V4C	31707	2024-09-23	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.004	0.63	0.0	0.05	17.46	0.00	2.582	4.55	9.09	9.4	90.6	0.0	-4.70	1.15	0.40	0.83	3.46	1287	186	3	0	0	0	0	logfile
✔	6WUA	21908	2024-09-27	2020-05-04	3.2	2.89	—	2.7	0.007	0.81	0.0	0.05	22.54	0.01	1.992	9.24	14.80	15.4	84.5	0.1	-4.41	0.72	0.80	2.77	3.0	0.003	0.62	0.0	0.04	21.96	0.00	2.130	6.55	9.05	11.2	88.8	0.0	-1.58	1.64	0.75	0.84	2.33	15195	833	9	402	1	0	0	logfile
✔	7oZG	13123	2024-09-23	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	3.7	0.005	0.78	0.0	0.05	15.31	0.00	2.591	15.91	8.98	12.2	87.8	0.0	-4.37	1.63	0.34	0.68	5.01	4960	730	10	0	0	0	0	logfile
✔	6MU2	9244	2024-09-24	2018-10-22	3.9	4.63	—	4.5	0.012	2.05	157.0	0.17	15.10	0.01	1.078	53.92	14.66	11.0	87.3	1.7	-1.58	0.70	0.68	0.40	4.5	0.005	1.01	1.0	0.06	16.08	0.00	2.390	21.65	8.93	11.0	88.7	0.4	-0.24	0.96	0.72	0.72	0.27	51404	8680	4	0	0	0	0	logfile
✔	8G3G	29695	2024-09-24	2023-02-07	3.5	3.73	2.78	3.7	0.007	1.15	2.0	0.08	19.09	0.01	2.216	12.71	9.45	8.0	92.0	0.0	-2.51	0.76	0.73	1.09	3.6	0.004	0.85	0.0	0.05	18.10	0.00	2.517	14.06	8.90	8.4	91.6	0.0	-2.26	1.16	0.77	0.75	1.27	7020	900	10	0	0	0	0	logfile
✔	6L1T	0801	2024-09-24	2019-09-30	3.22	3.42	—	3.4	0.011	0.93	0.0	0.06	14.40	0.00	2.296	12.89	0.00	12.6	87.4	0.0	-5.37	0.49	0.84	2.71	3.4	0.003	0.72	0.0	0.05	16.30	0.00	2.540	7.11	8.82	8.6	91.4	0.0	-3.87	1.42	0.48	0.86	3.47	7010	1000	10	0	0	0	0	logfile
✔	6VXo	21446	2024-09-24	2020-02-22	3.5	3.81	—	3.8	0.012	1.40	0.0	0.05	24.97	0.00	2.125	14.64	21.57	12.2	87.4	0.4	-3.90	0.63	0.83	0.88	3.8	0.003	0.76	0.0	0.04	19.03	0.00	2.490	9.40	8.82	8.7	91.3	0.0	-0.14	0.62	0.60	0.81	0.81	8048	904	8	0	12	0	0	logfile
✔	8WXE	37904	2024-09-23	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.89	0.0	0.04	18.41	0.00	2.476	12.77	8.76	4.8	95.2	0.0	-0.30	0.94	0.56	0.74	—	4388	548	9	0	1	0	0	logfile
✔	6N2D	9327	2024-09-24	2018-11-12	3.3	3.50	3.29	3.6	0.008	1.21	0.0	0.07	11.75	0.01	1.610	14.18	0.71	2.6	97.4	0.0	-2.81	0.61	0.78	1.68	3.5	0.005	0.81	0.0	0.05	16.27	0.01	2.534	17.57	8.62	1.9	98.1	0.0	2.02	0.62	0.61	0.80	0.79	7162	993	13	0	0	0	0	logfile
✔	6LRQ	0958	2024-09-23	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	3.6	0.005	0.76	0.0	0.05	15.20	0.00	2.474	13.97	8.52	12.0	88.0	0.0	-2.84	0.83	0.45	0.70	1.16	2628	378	6	0	0	0	0	logfile
✔	5W5F	8767	2024-09-29	2017-06-15	3.4	3.16	—	3.6	0.007	0.91	0.0	0.06	12.30	0.01	2.171	6.53	0.00	4.1	95.9	0.0	-2.49	0.66	0.71	0.69	3.5	0.005	0.76	0.0	0.05	17.13	0.00	2.348	12.03	8.35	5.0	95.0	0.0	-1.79	2.76	0.73	0.85	2.34	23472	2934	18	0	0	0	0	logfile

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