Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSV	22460	2024-09-29	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	14.87	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.80	0.0	0.04	16.90	0.00	2.467	11.92	2.77	1.3	98.7	0.0	2.20	0.87	0.65	0.84	3.08	22140	2706	82	0	41	0	0	logfile
✔	8CKW	16704	2024-09-27	2023-02-16	3.12	3.53	3.07	3.4	0.005	0.87	0.0	0.08	12.55	0.01	0.523	4.81	0.00	0.0	100.0	0.0	-0.70	0.57	0.82	3.51	3.4	0.004	0.67	0.0	0.04	16.90	0.00	2.471	8.78	1.20	1.1	98.9	0.0	1.03	1.19	0.58	0.85	2.44	13890	1785	15	0	0	0	0	logfile
✔	8BFB	16019	2024-09-23	2022-10-24	3.2	3.13	3.01	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.004	0.51	0.0	0.05	17.21	0.00	2.631	5.39	1.43	1.4	98.6	0.0	-2.94	1.02	0.51	0.86	6.54	2860	380	10	0	0	0	0	logfile
✔	6WL0	21814	2024-09-25	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	1.00	0.0	0.04	14.71	0.00	2.340	20.05	0.18	0.1	99.9	0.0	0.45	1.64	0.79	0.86	—	11480	1476	41	0	0	0	0	logfile
✔	8oLQ	16961	2024-09-23	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.5	0.002	0.49	0.0	0.05	14.47	0.00	2.564	3.28	3.20	8.7	91.3	0.0	-2.19	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	8oT1	17166	2024-09-23	2023-04-20	2.59	3.30	2.25	3.4	0.013	2.40	0.0	0.13	17.35	0.01	2.477	0.00	0.00	0.0	100.0	0.0	-3.37	0.47	0.69	6.48	3.4	0.004	0.93	0.0	0.05	16.54	0.00	2.643	9.86	2.78	5.1	94.9	0.0	-1.78	1.53	0.38	0.72	5.29	2460	336	12	0	0	0	0	logfile
✔	7UUQ	26800	2024-09-23	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.883	46.48	13.19	67.3	30.4	2.4	-10.55	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	7LQG	23485	2024-09-26	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.27	170.0	0.30	23.47	0.02	1.928	112.95	25.35	17.5	82.5	0.0	-6.19	1.11	0.67	0.87	3.23	12096	1152	144	0	0	0	0	logfile
✔	7LQF	23484	2024-09-23	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.28	240.0	0.42	26.83	0.03	1.674	199.65	28.12	58.2	40.2	1.6	-9.12	2.29	0.69	0.87	3.16	5376	512	64	0	0	0	0	logfile
✔	7TD6	25824	2024-09-23	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.004	0.85	0.0	0.05	18.67	0.00	2.411	10.89	3.36	8.1	91.9	0.0	-3.99	1.32	0.42	0.76	3.89	5575	690	5	0	0	0	0	logfile
✔	7ZXo	15012	2024-09-27	2022-05-21	2.5	2.89	2.54	2.7	0.003	0.52	0.0	0.04	15.39	0.01	2.030	2.71	1.36	0.0	100.0	0.0	4.19	0.72	0.88	3.47	2.7	0.003	0.48	0.0	0.04	16.19	0.00	2.641	3.09	0.94	1.1	98.9	0.0	4.13	0.62	0.64	0.91	3.17	17016	2124	12	0	0	0	0	logfile
✔	6K9F	9948	2024-09-27	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.19	0.0	0.05	17.56	0.00	2.378	21.33	4.75	1.7	98.3	0.0	-0.24	3.84	0.68	0.84	0.41	8484	1044	12	0	0	0	0	logfile
✔	8CL4	16712	2024-09-28	2023-02-16	3.14	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.53	0.78	2.49	3.6	0.003	0.68	0.0	0.04	17.30	0.01	2.471	7.82	1.55	1.6	98.4	0.0	1.55	2.43	0.52	0.79	1.53	13335	1725	15	0	0	0	0	logfile
✔	7Q66	13853	2024-09-23	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.77	0.0	0.05	16.37	0.00	2.516	11.85	11.07	0.3	99.7	0.0	-4.14	0.68	0.62	0.88	4.12	4807	682	22	0	0	0	0	logfile
✔	8F54	28860	2024-09-27	2022-11-11	2.5	2.67	2.56	2.7	0.003	0.45	0.0	0.03	11.59	0.00	2.491	0.57	0.00	0.0	100.0	0.0	3.06	0.68	0.76	3.44	2.7	0.003	0.55	0.0	0.04	18.25	0.01	2.600	1.88	1.85	1.3	98.7	0.0	3.65	1.37	0.67	0.81	3.46	66960	4020	60	0	0	0	33840	logfile
✔	8oL5	16949	2024-09-23	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.002	0.40	0.0	0.05	15.49	0.00	2.613	3.26	3.04	1.4	98.6	0.0	-1.23	1.92	0.55	0.88	5.40	2260	310	10	0	0	0	0	logfile
✔	8CL2	16710	2024-09-28	2023-02-16	3.45	3.69	3.44	3.6	0.004	0.82	0.0	0.05	12.07	0.01	2.192	3.59	0.00	0.0	100.0	0.0	-0.83	0.54	0.79	2.49	3.6	0.003	0.67	0.0	0.04	17.37	0.00	2.490	8.62	2.32	1.7	98.3	0.0	1.52	2.42	0.56	0.84	1.57	13335	1725	15	0	0	0	0	logfile
✔	8A4L	15148	2024-09-24	2022-06-12	2.68	2.73	1.77	2.8	0.004	0.65	0.0	0.05	13.43	0.00	2.385	10.11	0.00	0.0	100.0	0.0	-3.33	0.52	0.85	5.71	2.8	0.005	0.64	0.0	0.05	17.37	0.00	2.517	8.79	4.62	2.9	97.1	0.0	-3.64	1.16	0.53	0.87	5.67	7755	1125	15	0	0	0	0	logfile
✔	8FF3	29037	2024-09-23	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.51	0.0	0.06	11.60	0.00	2.568	4.58	0.00	0.7	99.3	0.0	-2.04	0.53	0.35	0.72	3.73	2190	150	6	0	0	0	1122	logfile
✔	8AWT	15696	2024-09-23	2022-08-30	3.0	3.11	2.92	3.1	0.003	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.006	0.55	0.0	0.04	10.29	0.00	2.287	0.00	0.00	2.9	97.1	0.0	-4.06	1.02	0.53	0.89	6.78	1910	260	20	0	10	0	0	logfile

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