Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AZS	15770	2024-09-24	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.2	0.028	4.05	31.0	0.17	24.42	0.02	2.053	345.81	15.67	48.7	44.4	6.9	-8.17	17.49	0.18	0.16	-0.10	9036	1224	36	0	0	0	0	logfile
✔	7LVT	23542	2024-09-28	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.73	0.0	0.04	12.94	0.00	2.032	10.20	0.00	5.5	94.3	0.1	0.03	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	8HiA	34813	2024-09-24	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.004	0.74	0.0	0.05	14.73	0.01	2.306	25.00	4.76	4.8	95.2	0.0	-5.19	12.04	0.66	0.21	—	7200	460	20	0	0	0	3660	logfile
✔	7JSH	22454	2024-09-24	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.21	0.0	0.05	13.28	0.00	2.348	9.55	0.00	27.4	72.4	0.3	-5.22	6.13	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	6YW7	10960	2024-09-23	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	8.08	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.98	0.0	0.02	6.48	0.00	2.560	9.51	0.00	11.3	88.6	0.2	-3.41	5.70	0.81	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7QKZ	14058	2024-09-23	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.024	4.11	1.0	0.38	19.43	0.01	2.461	9.46	2.02	1.2	98.8	0.0	-1.87	5.43	0.33	0.63	7.02	1701	99	9	0	0	0	891	logfile
✔	6R6B	4734	2024-09-25	2019-03-26	3.5	4.29	3.51	3.9	0.010	1.36	1.0	0.07	12.49	0.01	1.771	6.90	1.97	8.6	91.1	0.4	-5.15	0.70	0.70	2.25	3.9	0.004	1.06	0.0	0.05	16.21	0.00	2.364	15.13	2.76	6.2	93.8	0.1	-0.64	4.93	0.73	0.85	0.69	11416	1452	10	0	0	0	0	logfile
✔	6EBK	9024	2024-09-29	2018-08-06	3.3	3.33	—	3.2	0.012	1.29	0.0	0.07	10.86	0.01	2.049	6.69	0.13	3.8	96.2	0.0	-4.63	0.70	0.76	2.95	3.2	0.005	0.93	1.0	0.05	15.70	0.00	1.665	12.88	2.38	3.6	96.4	0.0	-0.31	4.82	0.76	0.88	2.51	22212	2848	20	0	4	128	0	logfile
✔	7JoA	22409	2024-09-27	2020-08-06	3.3	3.05	—	3.2	0.009	0.78	0.0	0.04	25.95	0.01	2.206	6.32	0.00	6.5	93.5	0.0	-0.33	0.79	0.82	1.49	3.2	0.004	0.59	0.0	0.04	26.06	0.00	2.527	5.64	1.14	2.7	97.3	0.0	1.83	4.78	0.81	0.86	1.54	14994	1125	12	290	1	0	0	logfile
✔	8V6L	42995	2024-09-29	2023-12-01	3.68	3.99	3.86	3.9	0.004	0.63	0.0	0.04	16.49	0.00	2.001	8.76	5.12	13.4	86.6	0.0	-1.18	0.68	0.82	2.42	4.0	0.003	0.77	0.0	0.04	17.88	0.00	2.334	8.21	4.65	11.2	88.7	0.0	-0.84	4.77	0.70	0.82	1.35	22387	2612	8	0	27	0	0	logfile
✔	6N1H	8902	2024-09-25	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.004	1.19	1.0	0.05	17.32	0.00	2.040	9.58	1.10	4.8	95.2	0.0	0.41	4.74	0.62	0.84	1.96	10991	1328	16	0	0	0	0	logfile
✔	7Uo0	26636	2024-09-25	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	29.93	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.5	0.004	0.82	0.0	0.04	30.47	0.00	2.164	13.26	1.02	5.5	94.5	0.0	-2.29	4.73	0.83	0.62	1.66	10697	112	4	455	7	0	0	logfile
✔	7RTM	24683	2024-09-25	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.86	0.0	0.04	16.11	0.00	2.352	10.47	2.00	4.7	95.3	0.1	0.01	4.69	0.66	0.78	1.46	9161	1142	6	0	12	0	0	logfile
✔	8D6X	27225	2024-09-28	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.004	0.73	0.0	0.05	14.96	0.00	2.367	26.07	1.82	5.1	94.9	0.0	-0.27	4.66	0.82	0.62	0.13	68362	8957	41	0	0	0	0	logfile
✔	8A7Q	15224	2024-09-24	2022-06-21	2.8	3.63	2.72	3.4	0.004	0.67	0.0	0.05	11.64	0.00	2.197	7.83	0.00	3.2	96.8	0.0	-5.05	0.45	0.75	5.43	3.4	0.005	1.17	0.0	0.05	16.35	0.00	2.504	13.47	2.46	7.9	92.1	0.0	-4.89	4.62	0.41	0.75	3.27	6492	768	12	0	0	0	0	logfile
✔	8U5N	41929	2024-09-23	2023-09-12	3.0	3.95	2.93	3.8	0.006	0.86	0.0	0.05	12.97	0.01	2.281	1.83	0.80	3.0	97.0	0.0	-0.95	0.55	0.67	0.23	3.8	0.004	1.01	0.0	0.05	16.48	0.00	2.421	15.43	2.40	2.8	97.2	0.0	0.97	4.60	0.55	0.76	1.20	4535	577	2	0	1	0	0	logfile
✔	6HRF	0260	2024-09-23	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.004	0.82	0.0	0.05	16.44	0.00	2.555	5.45	1.99	4.4	95.6	0.0	-3.40	4.59	0.36	0.77	3.42	3522	462	6	0	0	0	0	logfile
✔	7B5i	12034	2024-09-27	2020-12-03	2.8	2.89	2.91	2.8	0.006	0.81	0.0	0.05	13.15	0.01	2.309	4.79	0.26	3.7	96.3	0.0	-1.72	0.64	0.84	3.97	2.8	0.004	0.84	5.0	0.05	15.82	0.00	2.213	2.71	2.02	3.0	97.0	0.0	-0.77	4.58	0.67	0.87	3.91	64458	8100	30	0	0	0	0	logfile
✔	8ET9	28589	2024-09-24	2022-10-16	3.61	3.97	3.84	3.9	0.005	0.61	0.0	0.04	10.84	0.01	2.058	8.46	0.52	1.8	98.2	0.0	1.38	0.46	0.67	2.05	3.9	0.004	0.60	0.0	0.04	14.77	0.00	2.369	7.94	3.14	3.7	96.3	0.0	1.02	4.55	0.48	0.69	1.85	7685	517	2	0	1	0	3796	logfile

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