Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H0P	34413	2024-09-24	2022-09-30	3.15	2.98	3.14	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.003	0.58	0.0	0.04	13.61	0.00	2.502	7.92	2.04	2.9	97.1	0.0	-0.07	0.79	0.57	0.78	2.46	8932	1137	6	0	0	0	0	logfile
✔	7Xo0	33332	2024-09-23	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.45	0.0	0.05	17.20	0.00	2.581	3.43	2.71	6.9	93.1	0.0	-2.65	0.30	0.46	0.87	6.85	2550	372	6	0	0	0	0	logfile
✔	7WoG	32651	2024-09-23	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.72	0.0	0.05	11.04	0.00	2.444	17.39	0.00	14.1	85.9	0.0	-2.82	0.98	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	8K1V	36805	2024-09-23	2023-07-11	3.48	3.80	3.32	3.9	0.001	0.31	0.0	0.03	13.71	0.00	2.283	2.43	0.00	0.6	99.4	0.0	5.96	0.54	0.76	1.54	3.9	0.003	0.56	0.0	0.04	14.71	0.00	2.480	4.01	2.94	1.7	98.3	0.0	4.79	0.74	0.53	0.79	2.49	4059	484	6	0	11	2	0	logfile
✔	8TZV	41770	2024-09-23	2023-08-28	2.8	3.84	3.03	3.4	0.001	0.40	0.0	0.04	7.77	0.00	2.199	6.62	0.47	1.0	99.0	0.0	0.07	0.80	0.73	1.36	3.5	0.003	0.75	0.0	0.05	14.17	0.00	2.563	12.62	2.36	3.2	96.8	0.0	-0.07	3.16	0.82	0.76	1.55	5680	696	4	0	2	0	0	logfile
✔	9EM7	19812	2024-09-25	2024-03-07	3.6	4.42	3.88	4.0	0.001	0.36	0.0	0.04	8.21	0.00	1.964	4.68	0.15	1.6	98.4	0.0	2.73	0.87	0.74	0.77	4.0	0.002	0.47	0.0	0.03	12.87	0.00	2.354	35.00	1.25	1.9	98.1	0.0	2.71	0.92	0.90	0.83	0.60	57048	6336	8	0	0	0	6176	logfile
✔	7XMR	33302	2024-09-24	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.68	0.0	0.04	14.69	0.00	2.528	9.64	3.16	3.4	96.6	0.0	0.07	0.65	0.59	0.74	1.63	6611	871	5	0	0	0	0	logfile
✔	5G2X	3331	2024-09-28	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.06	0.0	0.05	25.06	0.01	1.903	37.36	5.67	23.3	75.6	1.1	-4.82	2.36	0.80	0.66	0.87	19072	487	3	704	0	0	0	logfile
✔	7JSH	22454	2024-09-24	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.21	0.0	0.05	13.28	0.00	2.348	9.55	0.00	27.4	72.4	0.3	-5.22	6.13	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	6KRD	0756	2024-09-26	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.70	0.0	0.04	12.12	0.00	2.336	10.92	0.06	3.5	96.4	0.1	-0.26	1.82	0.65	0.63	—	61005	8006	16	0	0	0	0	logfile
✔	7UVT	26816	2024-09-26	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.87	0.01	2.091	16.76	0.00	0.0	0.0	0.0	—	0.48	0.78	0.78	—	12409	0	1	386	0	0	4149	logfile
✔	8H8B	34541	2024-09-24	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.004	0.71	0.0	0.05	15.58	0.00	2.498	5.74	2.36	11.4	88.6	0.0	-1.82	0.62	0.74	0.85	3.71	8344	1027	1	0	0	0	0	logfile
✔	6XLH	22244	2024-09-26	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.61	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.003	0.64	0.0	0.04	16.34	0.00	1.941	7.10	1.93	3.3	96.7	0.0	-0.57	0.89	0.77	0.88	3.70	13608	1675	6	0	6	0	0	logfile
✔	6XLG	22243	2024-09-26	2020-06-28	2.71	2.81	—	2.8	0.001	0.36	0.0	0.04	10.47	0.00	2.105	5.84	0.00	1.3	98.7	0.0	-3.01	0.73	0.81	4.05	2.8	0.003	0.59	0.0	0.04	16.84	0.00	1.976	6.82	2.23	2.4	97.6	0.0	-0.02	3.19	0.77	0.89	4.13	12258	1504	6	0	6	0	0	logfile
✔	6NEQ	9358	2024-09-27	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	17.57	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.005	0.74	0.0	0.04	19.82	0.00	2.015	11.28	2.57	6.4	93.6	0.0	-0.50	2.00	0.85	0.85	1.53	65776	5509	33	952	147	0	0	logfile
✔	6NF8	9362	2024-09-27	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	17.55	0.00	1.916	3.08	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.004	0.68	0.0	0.04	19.36	0.00	2.095	10.66	2.20	5.7	94.3	0.0	-0.27	3.19	0.84	0.79	1.28	65776	5509	33	952	147	0	0	logfile
✔	6HD5	0201	2024-09-25	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.79	0.0	0.04	11.83	0.00	2.476	16.34	0.00	5.6	94.2	0.2	-0.50	2.01	0.45	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7LH3	23335	2024-09-25	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.002	0.58	0.0	0.04	10.63	0.00	2.542	8.15	0.00	2.7	97.3	0.0	2.04	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	6KS8	0760	2024-09-26	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.71	0.0	0.05	11.64	0.00	2.304	13.95	0.01	3.7	96.2	0.0	-0.28	1.86	0.81	0.72	—	61943	8120	16	0	0	0	0	logfile

• ← previous
• Page 2 of 505
• next →