Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K1V	36805	2024-09-23	2023-07-11	3.48	3.80	3.32	3.9	0.001	0.31	0.0	0.03	13.71	0.00	2.283	2.43	0.00	0.6	99.4	0.0	5.96	0.54	0.76	1.54	3.9	0.003	0.56	0.0	0.04	14.71	0.00	2.480	4.01	2.94	1.7	98.3	0.0	4.79	0.74	0.53	0.79	2.49	4059	484	6	0	11	2	0	logfile
✔	8i9U	35284	2024-09-27	2023-02-07	3.1	3.25	3.24	3.3	0.001	0.42	0.0	0.04	15.88	0.00	2.250	4.20	1.78	12.1	87.2	0.7	-2.67	0.56	0.55	0.11	3.3	0.003	0.69	0.0	0.04	16.85	0.00	2.422	5.24	1.86	5.9	94.0	0.1	-0.38	1.35	0.68	0.74	0.72	65141	8483	28	0	10	0	0	logfile
✔	7TBH	25799	2024-09-24	2021-12-22	2.3	3.49	—	2.8	0.001	0.43	0.0	0.03	8.12	0.00	2.141	6.17	0.43	7.8	91.4	0.8	0.80	0.78	0.76	0.52	2.8	0.003	0.67	0.0	0.04	13.92	0.00	2.468	6.56	0.64	2.8	96.8	0.4	2.95	0.91	0.81	0.86	2.78	51768	6288	48	0	0	0	0	logfile
✔	5G2Y	3332	2024-09-26	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.03	0.0	0.05	28.69	0.01	2.040	55.40	0.00	0.0	0.0	0.0	—	4.00	0.88	0.78	—	13494	0	1	630	0	0	0	logfile
✔	5G2X	3331	2024-09-28	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.06	0.0	0.05	25.06	0.01	1.903	37.36	5.67	23.3	75.6	1.1	-4.82	2.36	0.80	0.66	0.87	19072	487	3	704	0	0	0	logfile
✔	7VF9	31948	2024-09-30	2021-09-10	4.04	4.13	—	4.1	0.001	0.38	0.0	0.04	9.65	0.00	2.176	3.71	0.05	1.5	98.5	0.0	-4.44	0.74	0.74	—	4.1	0.007	0.82	0.0	0.05	12.45	0.01	1.956	8.23	0.09	6.5	93.5	0.0	-1.41	2.38	0.78	0.79	—	24247	3425	7	0	3	0	0	logfile
✔	6KS8	0760	2024-09-26	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.71	0.0	0.05	11.64	0.00	2.304	13.95	0.01	3.7	96.2	0.0	-0.28	1.86	0.81	0.72	—	61943	8120	16	0	0	0	0	logfile
✔	6XLB	22238	2024-09-25	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.003	0.69	0.0	0.05	16.25	0.00	2.451	13.28	2.01	3.2	96.8	0.0	-0.43	0.88	0.84	0.81	1.55	11180	1380	4	0	0	0	0	logfile
✔	6U5Z	20659	2024-09-30	2019-08-28	3.5	3.66	—	3.7	0.002	0.54	0.0	0.04	9.08	0.00	2.194	6.72	0.00	4.7	95.3	0.0	-1.58	0.49	0.58	0.79	3.7	0.004	0.79	1.0	0.05	14.17	0.00	2.205	10.72	1.32	4.8	95.2	0.0	0.15	1.02	0.57	0.60	1.32	24606	3174	6	0	0	0	0	logfile
✔	7FAS	31505	2024-09-25	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.55	0.0	0.04	17.48	0.00	2.528	7.35	2.14	4.8	95.2	0.0	0.89	1.13	0.73	0.75	0.83	10173	1229	1	0	0	0	0	logfile
✔	7VHL	31998	2024-09-30	2021-09-22	3.9	4.06	—	3.9	0.002	0.54	0.0	0.04	13.84	0.00	2.161	11.05	0.14	7.3	92.6	0.1	-1.26	0.82	0.81	1.34	3.9	0.006	0.67	0.0	0.04	15.36	0.00	2.471	12.19	1.30	9.8	90.2	0.1	-1.48	1.09	0.82	0.83	1.15	25462	3263	3	0	0	0	0	logfile
✔	6Y97	10733	2024-09-23	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.29	0.00	2.557	12.52	0.00	6.7	93.3	0.0	0.59	0.85	0.71	0.72	—	4366	564	4	0	0	0	0	logfile
✔	7EBF	31053	2024-09-26	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.76	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.005	0.59	0.0	0.04	16.15	0.00	2.567	6.92	2.41	3.2	96.8	0.0	0.68	0.54	0.67	0.81	3.26	13052	1640	4	0	0	0	0	logfile
✔	7WSE	32755	2024-09-25	2022-01-29	2.93	3.45	—	3.4	0.002	0.44	0.0	0.04	10.17	0.00	2.193	4.86	1.01	1.8	98.2	0.0	-0.67	0.69	0.79	3.50	3.4	0.003	0.61	0.0	0.04	14.89	0.00	2.128	6.69	3.03	2.0	98.0	0.0	0.72	0.81	0.57	0.76	2.51	6431	791	3	0	1	0	0	logfile
✔	7ZEP	14691	2024-09-26	2022-03-31	3.2	3.43	3.22	3.5	0.002	0.48	0.0	0.04	14.25	0.00	2.231	5.23	0.00	1.7	98.3	0.0	0.22	0.71	0.80	3.10	3.4	0.003	0.51	0.0	0.04	15.92	0.00	2.536	5.08	1.69	2.2	97.8	0.0	1.34	1.11	0.72	0.82	2.62	13324	1654	4	0	2	0	0	logfile
✔	7V0X	26952	2024-09-23	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.004	0.57	0.0	0.04	18.68	0.00	2.620	7.40	3.03	4.6	95.4	0.0	1.73	0.46	0.60	0.88	3.11	2818	375	1	0	0	0	0	logfile
✔	7WoP	32654	2024-09-23	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.004	0.80	0.0	0.05	15.16	0.01	2.431	16.01	6.86	16.8	83.2	0.0	-3.71	1.29	0.64	0.68	2.15	5107	669	3	0	0	0	0	logfile
✔	8iP3	35630	2024-09-26	2023-03-14	2.6	3.21	2.64	3.0	0.002	0.42	0.0	0.04	10.76	0.00	2.255	5.46	0.00	1.9	98.1	0.0	3.79	0.76	0.84	3.68	3.0	0.003	0.48	0.0	0.04	13.86	0.00	2.539	5.15	0.85	1.9	98.1	0.0	3.50	0.33	0.71	0.81	3.63	12868	1595	10	0	13	0	0	logfile
✔	7o73	12744	2024-09-29	2021-04-12	3.4	3.36	3.51	3.3	0.002	0.44	2.0	0.04	14.45	0.00	1.888	4.22	0.01	2.2	97.8	0.0	1.66	0.79	0.78	1.84	3.3	0.005	0.72	0.0	0.04	16.87	0.00	1.982	9.01	1.54	3.2	96.8	0.0	0.47	0.75	0.80	0.82	1.64	73768	8880	43	130	22	0	0	logfile
✔	7VD9	31911	2024-09-27	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.40	0.00	2.480	6.15	1.34	3.4	96.6	0.0	0.42	0.29	0.58	0.73	3.74	16426	1991	8	0	8	0	0	logfile

• ← previous
• Page 3 of 506
• next →