Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H3E	34465	2024-09-30	2022-10-08	3.06	3.44	3.40	3.3	0.005	0.52	0.0	0.04	16.70	0.00	1.960	8.20	0.22	5.4	94.6	0.0	-2.27	0.81	0.89	2.90	3.3	0.002	0.53	0.0	0.05	16.84	0.00	2.566	1.38	2.62	4.0	96.0	0.0	-1.55	0.90	0.81	0.88	2.59	24957	3159	6	0	18	0	0	logfile
✔	6ZJA	11233	2024-09-30	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.31	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.003	0.68	0.0	0.05	16.09	0.00	1.868	1.30	0.68	4.2	95.8	0.0	0.23	0.39	0.78	0.90	6.59	77951	9684	60	0	36	3191	0	logfile
✔	7JLU	22380	2024-09-24	2020-07-30	3.8	3.27	—	3.8	0.003	0.78	0.0	0.05	16.63	0.00	2.187	11.84	0.21	9.3	90.7	0.0	-1.56	0.74	0.78	1.46	3.8	0.003	0.69	0.0	0.04	17.95	0.00	2.447	8.36	2.74	8.4	91.6	0.0	-1.76	0.42	0.74	0.80	1.77	8592	1079	3	0	1	0	0	logfile
✔	6M3X	30073	2024-09-26	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.90	7.35	2.3	0.005	0.72	0.0	0.05	16.97	0.00	2.197	5.64	1.48	3.2	96.8	0.0	0.21	0.42	0.79	0.91	6.40	62387	7440	72	0	24	2243	0	logfile
✔	7JLX	22383	2024-09-23	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.005	0.94	0.0	0.05	8.03	0.01	2.232	3.80	0.00	17.7	81.1	1.2	-3.30	2.46	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	8Q74	18203	2024-09-23	2023-08-15	3.68	4.60	3.68	4.2	0.004	1.02	0.0	0.05	14.01	0.01	1.633	20.98	0.15	15.9	83.2	0.9	-2.37	0.66	0.80	1.25	4.2	0.004	0.82	0.0	0.05	16.34	0.01	1.486	17.07	2.00	12.3	86.8	0.9	-1.26	1.04	0.67	0.81	0.62	5943	783	2	0	1	0	0	logfile
✔	7UNF	26623	2024-09-27	2022-04-10	4.08	3.35	—	3.5	0.007	0.98	0.0	0.05	15.89	0.01	2.011	4.35	0.27	4.8	95.2	0.0	-5.90	0.66	0.82	—	3.5	0.003	0.66	0.0	0.04	14.96	0.00	2.277	5.78	0.03	3.7	96.3	0.0	-1.04	1.33	0.66	0.82	—	66971	8805	40	0	26	0	0	logfile
✔	7JLV	22381	2024-09-26	2020-07-30	3.8	3.34	—	3.5	0.004	0.85	0.0	0.05	17.00	0.00	2.050	9.62	0.00	7.8	92.2	0.0	-0.91	0.61	0.82	1.74	3.5	0.004	0.64	0.0	0.04	17.72	0.00	1.960	7.09	1.21	8.4	91.6	0.0	-0.84	0.41	0.61	0.83	2.26	14336	1748	8	0	8	0	0	logfile
✔	6RDN	4824	2024-09-25	2019-04-12	3.2	3.31	3.24	3.3	0.011	1.02	0.0	0.06	14.49	0.01	2.023	6.09	0.41	5.2	94.6	0.2	-3.89	0.69	0.82	2.67	3.3	0.003	0.63	0.0	0.04	16.02	0.00	1.966	8.04	2.08	4.0	95.8	0.1	0.41	1.20	0.71	0.85	2.19	53748	7103	37	0	11	0	0	logfile
✔	6REP	4853	2024-09-25	2019-04-12	3.1	3.08	—	3.1	0.011	0.98	0.0	0.06	14.36	0.01	1.436	5.60	0.48	4.7	95.1	0.2	-5.14	0.71	0.84	3.59	3.1	0.003	0.72	2.0	0.04	15.71	0.00	2.003	7.45	1.47	3.3	96.6	0.1	0.49	0.48	0.74	0.87	2.64	53782	7104	43	0	11	26	0	logfile
✔	6RDo	4825	2024-09-25	2019-04-12	3.1	3.05	—	3.2	0.011	1.02	0.0	0.06	14.49	0.01	2.023	6.09	0.41	5.2	94.6	0.2	-3.89	0.71	0.84	3.15	3.2	0.003	0.59	0.0	0.04	15.81	0.00	1.940	7.02	1.65	3.9	96.0	0.1	0.66	1.57	0.71	0.86	2.29	53748	7103	37	0	11	0	0	logfile
✔	8Q75	18204	2024-09-23	2023-08-15	3.2	4.13	3.25	3.8	0.006	1.56	0.0	0.05	14.77	0.01	1.828	20.97	0.62	12.3	86.1	1.6	-2.02	0.69	0.83	1.72	3.8	0.004	0.87	0.0	0.05	16.30	0.01	1.904	13.73	2.19	11.0	88.2	0.8	-0.97	0.67	0.69	0.83	1.25	5870	774	2	0	2	0	0	logfile
✔	6WZ9	21971	2024-09-25	2020-05-13	2.8	2.45	—	3.0	0.006	0.74	0.0	0.04	28.90	0.01	2.015	6.87	2.27	1.7	98.3	0.0	0.07	0.73	0.70	2.55	3.0	0.004	0.65	0.0	0.04	29.05	0.01	2.437	9.77	4.55	2.5	97.5	0.0	1.92	0.50	0.74	0.73	2.41	11926	738	10	296	0	0	0	logfile
✔	6RDW	4833	2024-09-25	2019-04-12	3.8	3.78	—	3.8	0.010	1.05	0.0	0.06	15.09	0.01	2.050	6.72	0.55	5.8	94.0	0.2	-4.32	0.66	0.83	1.85	3.8	0.004	0.69	0.0	0.04	16.66	0.00	1.852	10.36	3.29	4.8	95.1	0.1	-0.30	0.55	0.66	0.83	1.31	53748	7103	37	0	11	0	0	logfile
✔	8HBW	34645	2024-09-23	2022-10-31	2.57	2.69	2.51	2.7	0.010	1.05	0.0	0.05	16.26	0.01	2.199	7.29	0.00	2.2	97.8	0.0	1.60	0.63	0.87	4.58	2.8	0.004	0.58	0.0	0.04	16.84	0.00	2.528	6.53	1.48	2.0	98.0	0.0	3.03	1.22	0.62	0.88	4.27	3309	414	3	0	4	0	0	logfile
✔	8EX9	28655	2024-09-23	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.006	0.68	0.0	0.04	24.01	0.00	2.471	12.07	4.76	6.8	93.2	0.0	-1.31	0.25	0.63	0.73	4.32	4199	166	4	139	0	0	0	logfile
✔	7WPC	32682	2024-09-24	2022-01-23	2.57	2.17	—	2.0	0.004	0.72	0.0	0.05	17.02	0.01	2.253	2.54	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.005	0.68	0.0	0.05	17.26	0.00	1.882	8.07	1.62	4.5	95.5	0.0	-0.94	1.32	0.75	0.81	3.00	8057	980	6	0	9	0	0	logfile
✔	6RDF	4816	2024-09-28	2019-04-12	3.2	3.30	3.25	3.2	0.008	0.89	0.0	0.05	13.40	0.01	2.212	4.09	0.15	4.7	95.2	0.2	-6.00	0.50	0.84	3.59	3.3	0.005	0.68	0.0	0.04	15.41	0.00	2.374	6.56	1.60	4.1	95.8	0.0	0.65	1.17	0.51	0.87	2.63	19855	2597	18	0	1	29	0	logfile
✔	8Q73	18202	2024-09-23	2023-08-15	3.58	5.00	3.87	4.6	0.004	0.92	0.0	0.05	14.50	0.01	2.243	12.12	0.00	12.6	86.4	1.0	-2.53	0.65	0.76	0.56	4.6	0.004	0.86	0.0	0.05	16.21	0.00	2.502	15.38	1.86	12.2	86.9	0.9	-1.62	1.07	0.66	0.79	0.56	5909	779	1	0	0	0	0	logfile
✔	6RDR	4828	2024-09-25	2019-04-12	4.1	4.19	4.13	4.1	0.007	0.94	0.0	0.05	15.03	0.01	1.908	6.99	0.44	5.2	94.6	0.2	-4.22	0.67	0.74	—	4.1	0.004	0.73	0.0	0.04	14.05	0.00	1.849	11.75	0.00	5.3	94.6	0.1	-0.34	1.29	0.69	0.79	—	53748	7103	37	0	11	0	0	logfile

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