Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZEP	14691	2024-09-26	2022-03-31	3.2	3.43	3.22	3.5	0.002	0.48	0.0	0.04	14.25	0.00	2.231	5.23	0.00	1.7	98.3	0.0	0.22	0.71	0.80	3.10	3.4	0.003	0.51	0.0	0.04	15.92	0.00	2.536	5.08	1.69	2.2	97.8	0.0	1.34	1.11	0.72	0.82	2.62	13324	1654	4	0	2	0	0	logfile
✔	7XLQ	33285	2024-09-29	2022-04-22	3.1	3.36	3.17	3.4	0.006	0.85	0.0	0.05	16.12	0.01	2.117	12.12	0.33	8.0	91.9	0.1	-3.52	0.65	0.81	3.29	3.4	0.003	0.64	0.0	0.04	16.09	0.00	2.285	6.92	1.97	6.6	93.4	0.0	-0.63	0.45	0.64	0.82	2.33	20132	2436	8	0	33	0	0	logfile
✔	8oL5	16949	2024-09-23	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.002	0.40	0.0	0.05	15.49	0.00	2.613	3.26	3.04	1.4	98.6	0.0	-1.23	1.92	0.55	0.88	5.40	2260	310	10	0	0	0	0	logfile
✔	7TF3	25860	2024-09-29	2022-01-06	2.25	2.94	—	2.8	0.005	0.82	0.0	0.06	12.94	0.01	2.287	3.03	0.00	2.0	98.0	0.0	0.09	0.79	0.83	3.63	2.7	0.003	0.56	0.0	0.04	14.24	0.00	2.469	4.98	1.14	2.0	98.0	0.0	0.92	1.84	0.79	0.84	3.48	21873	2703	24	0	56	0	0	logfile
✔	7N0D	24104	2024-09-29	2021-05-25	2.5	3.26	—	3.2	0.005	0.85	0.0	0.05	14.94	0.01	2.032	4.21	0.00	1.1	98.9	0.0	-2.65	0.72	0.78	4.49	3.2	0.004	0.59	0.0	0.04	16.15	0.00	1.993	5.42	0.68	3.9	96.1	0.0	-0.41	1.17	0.71	0.78	3.91	21846	2572	26	76	28	4	0	logfile
✔	7S8V	24927	2024-09-26	2021-09-20	3.73	4.42	—	3.9	0.004	0.65	0.0	0.09	13.87	0.00	2.098	5.61	0.14	7.0	93.0	0.0	-3.48	0.68	0.64	0.04	3.9	0.003	0.68	0.0	0.05	14.24	0.00	2.094	8.62	0.85	6.6	93.4	0.0	-1.95	1.16	0.70	0.70	0.94	12502	782	7	0	12	0	6045	logfile
✔	8EoE	28373	2024-09-30	2022-10-03	3.2	3.93	3.21	3.5	0.003	0.63	0.0	0.05	22.43	0.01	1.984	5.34	17.34	9.0	90.4	0.5	-3.14	0.88	0.86	2.23	3.5	0.006	0.66	0.0	0.04	19.60	0.00	1.938	4.87	2.56	5.7	94.2	0.1	-0.63	0.69	0.90	0.90	2.14	25301	3030	10	88	3	0	0	logfile
✔	7MLV	23911	2024-09-27	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	15.50	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.004	0.81	0.0	0.05	12.36	0.00	2.518	17.06	0.00	8.6	91.4	0.0	-3.19	1.68	0.70	0.69	—	15055	1919	16	0	22	0	0	logfile
✔	8AMX	15528	2024-09-27	2022-08-04	2.55	2.79	2.59	2.7	0.004	0.63	0.0	0.04	11.93	0.01	2.414	2.40	0.00	2.4	97.2	0.3	2.10	0.64	0.86	3.96	2.7	0.003	0.56	0.0	0.04	15.17	0.00	2.625	3.26	0.50	3.2	96.4	0.3	2.78	0.24	0.69	0.89	2.98	15633	2024	16	0	0	57	0	logfile
✔	7TEW	25853	2024-09-24	2022-01-06	3.52	4.17	—	3.8	0.005	0.85	0.0	0.06	13.34	0.01	2.344	2.89	0.14	1.4	98.6	0.0	0.00	0.82	0.82	2.55	3.8	0.003	0.58	0.0	0.04	15.52	0.00	2.571	8.04	1.57	2.3	97.7	0.0	1.59	1.57	0.83	0.84	2.00	6555	797	4	0	7	0	0	logfile
✔	6UTJ	20881	2024-09-25	2019-10-29	2.9	3.16	3.00	3.2	0.009	1.34	0.0	0.07	10.47	0.01	2.212	7.86	1.01	5.1	94.7	0.3	-2.93	0.74	0.79	2.56	3.2	0.004	0.73	0.0	0.04	16.96	0.00	2.422	10.63	5.24	3.5	96.4	0.2	0.61	1.52	0.73	0.83	2.93	58359	7546	35	0	0	0	0	logfile
✔	7Y15	33557	2024-09-24	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	7.87	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.004	0.61	0.0	0.04	16.37	0.00	2.415	7.33	2.36	3.1	96.9	0.0	1.37	0.22	0.66	0.85	3.48	8495	1109	6	0	3	0	0	logfile
✔	8DLV	27517	2024-09-24	2022-07-08	3.11	3.78	3.18	3.5	0.006	0.88	0.0	0.06	13.40	0.01	2.311	2.66	0.29	1.5	98.5	0.0	-0.25	0.82	0.85	2.77	3.5	0.003	0.53	0.0	0.04	14.94	0.00	2.482	5.70	1.00	2.5	97.5	0.0	1.79	0.61	0.83	0.87	2.20	6553	797	4	0	7	0	0	logfile
✔	7MJL	23877	2024-09-23	2021-04-20	2.95	3.62	—	3.3	0.005	0.82	0.0	0.05	12.25	0.01	2.351	2.77	0.00	3.9	96.1	0.0	-0.85	0.80	0.87	3.95	3.3	0.003	0.57	0.0	0.04	14.76	0.00	2.447	4.68	1.13	2.8	97.2	0.0	0.36	0.42	0.80	0.87	3.60	4788	621	4	0	1	0	0	logfile
✔	8DM4	27526	2024-09-23	2022-07-08	2.45	2.88	2.45	2.8	0.006	0.90	0.0	0.06	13.36	0.01	2.259	4.06	0.23	4.1	95.9	0.0	-0.05	0.69	0.81	4.67	2.9	0.005	0.66	0.0	0.05	15.29	0.00	2.397	8.25	2.06	3.1	96.9	0.0	0.10	1.17	0.68	0.83	5.38	4018	497	5	0	6	0	0	logfile
✔	7BH1	12185	2024-09-29	2021-01-09	3.38	3.94	3.49	3.8	0.014	1.15	0.0	0.06	14.32	0.01	2.178	11.08	0.35	8.4	91.6	0.0	-3.52	0.68	0.81	2.06	3.8	0.003	0.60	0.0	0.04	14.67	0.00	2.437	8.86	0.80	4.8	95.2	0.0	0.19	0.46	0.63	0.78	1.62	21961	1444	8	0	2	6	11139	logfile
✔	7SXY	25510	2024-09-24	2021-11-24	2.79	3.53	—	3.2	0.005	0.84	0.0	0.06	13.17	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	3.2	0.003	0.57	0.0	0.04	14.73	0.00	2.429	5.00	0.71	1.8	98.2	0.0	1.34	1.08	0.81	0.86	2.86	6557	797	4	0	7	0	0	logfile
✔	8EAU	27986	2024-09-29	2022-08-29	3.1	3.32	3.11	3.3	0.004	0.64	0.0	0.04	12.72	0.00	2.097	9.07	0.00	1.7	98.3	0.0	1.07	0.67	0.82	3.62	3.3	0.003	0.56	0.0	0.04	14.87	0.00	2.476	8.03	2.19	1.7	98.3	0.0	1.71	1.52	0.69	0.85	2.77	21909	2946	16	0	0	0	0	logfile
✔	7TF1	25858	2024-09-26	2022-01-06	3.57	4.05	—	3.9	0.004	0.77	0.0	0.06	12.71	0.01	2.300	2.67	0.36	2.5	97.5	0.0	-1.40	0.60	0.81	2.33	3.9	0.003	0.61	0.0	0.05	14.20	0.00	2.452	6.30	2.02	2.5	97.5	0.0	-0.37	0.73	0.61	0.83	1.51	12786	1608	12	0	12	0	0	logfile
✔	7SY2	25514	2024-09-24	2021-11-24	3.11	3.85	—	3.5	0.005	0.84	0.0	0.06	13.46	0.01	2.307	2.03	0.14	1.4	98.6	0.0	-0.46	0.82	0.85	2.53	3.5	0.004	0.56	0.0	0.04	15.21	0.00	2.473	7.50	0.86	2.5	97.5	0.0	1.70	1.15	0.83	0.87	2.26	6554	797	4	0	7	0	0	logfile

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