Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q27	18070	2024-09-24	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.003	0.57	0.0	0.05	15.75	0.00	2.561	0.86	0.25	3.9	96.1	0.0	-1.48	1.11	0.34	0.88	7.35	7002	453	6	0	0	0	3567	logfile
✔	8UoY	42441	2024-09-26	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.61	0.00	2.251	11.83	6.01	10.6	89.2	0.2	-3.21	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile
✔	8Q98	18271	2024-09-24	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.51	0.0	0.05	13.42	0.00	2.608	1.42	0.51	1.1	98.9	0.0	-0.45	0.90	0.43	0.90	8.04	7032	450	6	0	0	0	3588	logfile
✔	3JC2	3245	2024-09-23	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.91	0.0	0.05	17.36	0.01	2.543	13.06	2.68	7.2	92.1	0.6	-1.72	2.35	0.24	0.54	1.76	3911	482	4	0	32	0	0	logfile
✔	7FG3	31577	2024-09-25	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.005	1.11	0.0	0.05	16.69	0.01	2.298	18.78	2.69	13.2	86.3	0.5	-3.44	0.77	0.22	0.43	0.35	9054	1166	2	0	0	0	0	logfile
✔	7W6P	32331	2024-09-24	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.5	0.004	0.79	0.0	0.05	15.92	0.00	2.503	16.77	2.44	6.3	93.7	0.0	-0.85	1.95	0.33	0.28	0.86	8408	1083	6	0	1	0	0	logfile
✔	8TiF	41286	2024-09-23	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.003	0.53	0.0	0.04	16.99	0.00	2.624	3.29	6.12	0.8	99.2	0.0	0.55	0.32	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	7Q3U	13795	2024-09-23	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.004	0.89	0.0	0.04	18.73	0.00	2.527	16.46	2.38	10.7	89.3	0.0	-5.99	2.23	0.33	0.60	3.26	2355	355	5	0	0	0	0	logfile
✔	7BC5	12139	2024-09-23	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.70	0.0	0.04	16.90	0.00	2.565	11.94	3.05	8.2	91.8	0.0	-2.99	1.28	0.23	0.58	1.60	1200	161	1	0	0	0	0	logfile
✔	8UPT	42455	2024-09-23	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	5FN1	3236	2024-09-26	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	12.98	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.006	1.10	4.0	0.04	17.40	0.01	1.887	17.86	2.20	9.8	89.3	0.9	-0.97	2.04	0.40	0.73	1.02	61308	3906	36	90	0	0	30078	logfile
✔	5Li4	4052	2024-09-28	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	14.11	0.01	2.275	24.65	0.00	15.2	83.7	1.1	-3.90	4.20	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	8oLQ	16961	2024-09-23	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.5	0.002	0.49	0.0	0.05	14.47	0.00	2.564	3.28	3.20	8.7	91.3	0.0	-2.19	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	8oLG	16957	2024-09-23	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	0.92	0.0	0.05	15.70	0.00	2.530	19.49	0.00	17.8	82.2	0.0	-4.69	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	8V3L	42949	2024-09-25	2023-11-28	4.3	3.45	4.78	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	3.0	0.003	0.65	0.0	0.04	13.22	0.00	2.389	10.54	0.16	3.1	96.7	0.1	1.08	1.58	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	9Eo9	19849	2024-09-23	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.003	0.79	0.0	0.05	14.70	0.00	2.549	3.75	2.21	2.0	98.0	0.0	-2.43	1.06	0.29	0.79	3.65	1190	154	2	0	0	0	0	logfile
✔	8ZLo	60231	2024-09-23	2024-05-20	3.1	2.98	2.81	3.3	0.015	1.52	0.0	0.08	17.15	0.01	2.063	28.08	0.00	9.4	90.6	0.0	-4.08	0.25	0.57	3.84	3.1	0.007	1.05	0.0	0.06	15.25	0.00	2.597	10.40	4.82	10.2	89.8	0.0	-4.11	1.95	0.51	0.88	2.55	4816	660	18	0	10	0	0	logfile
✔	8Q9E	18278	2024-09-24	2023-08-20	2.97	2.51	2.93	2.7	0.011	1.89	2.0	0.11	11.77	0.01	2.528	0.59	1.32	1.9	98.1	0.0	-1.47	0.25	0.73	5.90	2.7	0.003	0.58	0.0	0.05	16.83	0.01	2.518	1.77	0.53	1.7	98.3	0.0	-1.38	1.29	0.34	0.83	4.71	6768	432	6	0	0	0	3456	logfile
✔	8G5V	29756	2024-09-26	2023-02-14	3.0	2.99	4.36	3.8	0.004	0.61	0.0	0.04	12.94	0.01	2.223	7.63	0.00	2.9	97.1	0.0	2.14	0.25	0.24	0.28	3.1	0.003	0.75	0.0	0.04	16.67	0.01	2.467	11.22	1.11	2.3	97.7	0.0	1.37	3.07	0.47	0.78	2.28	13739	1718	12	0	0	0	0	logfile
✔	8Q9G	18280	2024-09-24	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.004	0.63	0.0	0.05	16.57	0.00	2.484	2.05	1.30	2.1	97.9	0.0	-2.20	1.19	0.34	0.84	6.63	6822	438	6	0	0	0	3480	logfile

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