Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HiA	34813	2024-09-24	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.004	0.74	0.0	0.05	14.73	0.01	2.306	25.00	4.76	4.8	95.2	0.0	-5.19	12.04	0.66	0.21	—	7200	460	20	0	0	0	3660	logfile
✔	8G9R	29874	2024-09-23	2023-02-21	3.28	3.68	2.90	44.0	0.003	0.59	0.0	0.05	16.84	0.01	2.542	2.24	0.00	5.7	94.3	0.0	-3.38	0.13	0.07	1.03	4.2	0.003	0.73	0.0	0.05	16.85	0.01	2.576	13.02	2.05	8.0	92.0	0.0	-3.77	2.57	0.26	0.34	2.06	3570	455	5	0	0	0	0	logfile
✔	8GWE	34310	2024-09-29	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	18.80	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.005	0.98	1.0	0.05	18.69	0.01	1.680	19.14	3.73	9.2	90.6	0.2	-2.36	1.14	0.46	0.25	0.47	22040	2668	15	56	10	1	0	logfile
✔	8V85	43023	2024-09-23	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.93	0.0	0.05	13.63	0.00	2.434	26.60	0.58	4.6	95.4	0.0	-1.13	4.15	0.34	0.27	1.13	1539	197	1	0	0	0	0	logfile
✔	7W6P	32331	2024-09-24	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.5	0.004	0.79	0.0	0.05	15.92	0.00	2.503	16.77	2.44	6.3	93.7	0.0	-0.85	1.95	0.33	0.28	0.86	8408	1083	6	0	1	0	0	logfile
✔	7YKS	33896	2024-09-28	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.004	0.80	0.0	0.04	16.62	0.00	2.364	7.21	1.33	4.4	95.6	0.0	-0.50	2.17	0.60	0.80	1.50	18984	2364	4	0	0	0	0	logfile
✔	8X63	38078	2024-09-23	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.003	0.75	0.0	0.04	16.99	0.01	2.632	7.24	3.25	8.3	91.7	0.0	0.37	1.30	0.29	0.47	1.06	2252	270	2	0	1	0	0	logfile
✔	5o9G	3765	2024-09-28	2017-06-19	4.8	5.07	4.71	10.4	0.003	0.48	0.0	0.03	22.57	0.00	2.194	7.39	0.36	9.1	90.8	0.1	-4.25	0.51	0.13	—	4.8	0.012	0.84	0.0	0.04	24.43	0.01	1.554	20.62	0.00	5.4	94.5	0.1	-1.48	2.60	0.85	0.74	—	19681	1610	12	324	2	0	0	logfile
✔	6PB5	20287	2024-09-28	2019-06-13	4.52	5.95	—	8.8	0.011	1.31	0.0	0.06	16.37	0.01	1.966	13.18	0.26	11.6	87.7	0.7	-4.55	0.58	0.14	—	4.0	0.004	0.81	0.0	0.04	16.97	0.01	1.871	24.64	0.00	12.7	87.0	0.2	-3.06	2.23	0.78	0.62	—	69696	4084	13	156	5	0	34319	logfile
✔	5M5H	4155	2024-09-23	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.99	0.0	0.06	13.01	0.01	2.385	23.84	0.00	9.5	90.5	0.0	-1.32	1.80	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	8UoP	42435	2024-09-26	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.65	0.0	0.04	17.06	0.00	2.263	11.38	3.37	12.6	87.1	0.3	-3.11	0.92	0.24	0.23	0.07	13188	872	2	0	0	0	6544	logfile
✔	6CAJ	7442	2024-09-30	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	10.48	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.003	0.67	0.0	0.04	16.38	0.00	2.484	9.72	2.72	4.8	95.2	0.0	0.09	1.20	0.74	0.84	2.90	24295	3210	11	0	1	0	0	logfile
✔	5WVE	6690	2024-09-30	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.50	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.003	0.83	0.0	0.04	13.68	0.00	1.841	18.85	0.00	7.2	92.2	0.6	-1.71	2.03	0.79	0.59	—	78605	9766	39	0	21	0	0	logfile
✔	8GWG	34312	2024-09-29	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	18.83	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.004	0.93	0.0	0.05	18.78	0.01	2.084	20.06	2.46	9.2	90.6	0.2	-2.60	1.95	0.78	0.66	0.36	21955	2668	13	52	9	1	0	logfile
✔	1oED	1044	2024-09-23	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.1	0.004	1.04	0.0	0.05	16.17	0.01	2.570	21.32	2.25	2.1	97.9	0.0	1.35	2.68	0.61	0.40	—	4926	636	5	0	0	0	0	logfile
✔	8BY8	16324	2024-09-25	2022-12-12	2.5	3.35	2.68	3.1	0.002	0.50	0.0	0.04	13.68	0.00	1.849	5.96	2.50	3.5	96.4	0.1	0.08	0.60	0.19	2.90	3.1	0.003	0.55	0.0	0.04	14.50	0.00	2.338	5.37	1.34	3.8	96.1	0.1	0.33	0.98	0.76	0.73	2.99	38783	2568	2	0	0	0	19223	logfile
✔	8SZ7	40902	2024-09-23	2023-05-27	2.84	3.08	2.87	3.6	0.003	0.46	0.0	0.04	9.67	0.00	2.393	1.99	0.00	0.9	99.1	0.0	1.11	0.17	0.20	2.22	3.2	0.003	0.62	0.0	0.04	12.99	0.00	2.516	3.73	1.36	1.3	98.7	0.0	2.29	1.13	0.44	0.67	0.78	4026	240	1	0	0	0	2021	logfile
✔	8DHX	27437	2024-09-26	2022-06-28	2.92	3.26	3.25	6.7	0.004	0.82	0.0	0.04	17.61	0.00	2.218	6.05	1.95	1.8	97.7	0.6	3.55	0.41	0.20	4.09	3.3	0.003	0.62	0.0	0.03	18.30	0.00	2.625	6.06	2.27	2.3	97.7	0.0	5.48	0.44	0.70	0.78	3.35	34200	4152	24	0	0	0	0	logfile
✔	7R4Q	14314	2024-09-24	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	16.09	0.02	1.866	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.005	1.10	8.0	0.17	15.29	0.01	1.971	20.81	1.38	7.9	92.1	0.0	-1.91	1.65	0.62	0.55	0.51	51420	3414	13	0	43	0	24182	logfile
✔	8J0o	35907	2024-09-29	2023-04-11	3.32	4.35	3.46	7.0	0.014	0.97	0.0	0.04	18.12	0.01	1.915	13.09	0.40	8.4	91.4	0.3	-1.15	0.52	0.21	0.30	4.0	0.005	1.10	0.0	0.05	17.49	0.01	2.317	20.74	3.60	9.7	89.9	0.3	-1.65	1.84	0.74	0.73	0.75	20986	2627	13	0	9	0	0	logfile

• ← previous
• Page 2 of 505
• next →