Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TKo	25976	2024-09-28	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.007	1.06	0.0	0.00	6.51	0.01	2.257	7.86	0.00	13.1	86.7	0.3	-1.00	0.84	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	5G2Y	3332	2024-09-26	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.03	0.0	0.05	28.69	0.01	2.040	55.40	0.00	0.0	0.0	0.0	—	4.00	0.88	0.78	—	13494	0	1	630	0	0	0	logfile
✔	7JSE	22451	2024-09-26	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	4.0	0.004	0.95	0.0	0.07	14.02	0.00	2.539	1.70	0.00	14.0	86.0	0.0	-1.86	2.74	0.88	0.61	—	13288	3168	24	32	0	0	0	logfile
✔	7JSH	22454	2024-09-24	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.21	0.0	0.05	13.28	0.00	2.348	9.55	0.00	27.4	72.4	0.3	-5.22	6.13	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7UVT	26816	2024-09-26	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.87	0.01	2.091	16.76	0.00	0.0	0.0	0.0	—	0.48	0.78	0.78	—	12409	0	1	386	0	0	4149	logfile
✔	5A8L	3099	2024-09-26	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	21.13	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.004	0.77	0.0	0.04	22.97	0.01	2.453	13.44	5.69	11.1	87.8	1.1	-2.47	1.86	0.23	0.62	0.61	12264	624	9	347	0	0	0	logfile
✔	7XSL	33426	2024-09-26	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.74	0.01	1.881	26.63	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XSK	33425	2024-09-26	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.76	0.01	1.907	23.98	0.00	0.0	0.0	0.0	—	1.91	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	8HD6	34670	2024-09-24	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.007	0.76	0.0	0.04	24.78	0.01	1.771	18.56	0.00	0.0	0.0	0.0	—	2.23	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	6UES	20755	2024-09-23	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	26.31	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.90	0.0	0.04	27.47	0.01	1.929	30.44	0.00	0.0	0.0	0.0	—	0.83	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7YCH	33739	2024-09-24	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.68	0.0	0.04	24.23	0.00	1.795	28.44	0.00	0.0	0.0	0.0	—	1.46	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	7YC8	33736	2024-09-24	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.971	60.55	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	5G2X	3331	2024-09-28	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.06	0.0	0.05	25.06	0.01	1.903	37.36	5.67	23.3	75.6	1.1	-4.82	2.36	0.80	0.66	0.87	19072	487	3	704	0	0	0	logfile
✔	7YCi	33740	2024-09-24	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.007	0.68	0.0	0.04	24.68	0.00	1.863	22.55	0.00	0.0	0.0	0.0	—	1.23	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	8HAN	34597	2024-09-27	2022-10-26	4.2	4.31	4.16	3.4	0.003	0.54	0.0	0.03	24.99	0.00	2.219	8.41	0.00	1.1	98.9	0.0	2.88	0.83	0.72	—	2.9	0.003	0.62	0.0	0.04	26.62	0.00	2.465	11.70	0.00	2.4	97.6	0.0	2.15	0.81	0.86	0.79	—	16180	1261	11	294	0	0	0	logfile
✔	7V99	31811	2024-09-27	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	20.83	0.00	2.258	7.85	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.003	0.61	0.0	0.03	21.08	0.00	2.463	10.72	2.01	5.2	94.7	0.1	-0.26	1.36	0.82	0.75	0.62	14582	1170	5	249	0	0	0	logfile
✔	6HD5	0201	2024-09-25	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.79	0.0	0.04	11.83	0.00	2.476	16.34	0.00	5.6	94.2	0.2	-0.50	2.01	0.45	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	8G86	29837	2024-09-26	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.26	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.5	0.004	0.62	0.0	0.04	28.89	0.00	2.104	7.04	3.64	1.2	98.8	0.0	2.56	0.91	0.69	0.85	4.76	11972	759	10	290	0	0	0	logfile
✔	6NEQ	9358	2024-09-27	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	17.57	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.005	0.74	0.0	0.04	19.82	0.00	2.015	11.28	2.57	6.4	93.6	0.0	-0.50	2.00	0.85	0.85	1.53	65776	5509	33	952	147	0	0	logfile

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