Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J9C	6224	2024-09-29	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.005	0.62	0.0	0.05	16.40	0.00	2.125	6.44	3.92	3.1	96.9	0.0	-0.06	1.43	0.76	0.87	3.17	23296	2961	14	0	14	0	0	logfile
✔	3J9D	6239	2024-09-23	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.66	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.84	0.0	0.04	17.95	0.00	2.320	14.54	6.01	7.4	92.2	0.4	-1.66	2.35	0.75	0.84	2.63	6086	746	2	0	1	0	0	logfile
✔	3J9E	6240	2024-09-23	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.74	0.0	0.04	17.95	0.00	2.522	8.15	3.89	7.6	91.5	1.0	0.82	1.24	0.74	0.85	2.95	4098	520	1	0	0	0	0	logfile
✔	5AEY	2850	2024-09-26	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	22.05	0.01	2.197	7.01	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.004	0.79	0.0	0.05	15.95	0.00	2.502	12.20	0.00	9.5	90.5	0.0	-1.02	2.58	0.63	0.77	—	12675	1590	10	0	5	0	0	logfile
✔	3J9J	5778	2024-09-28	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.67	0.0	0.04	15.63	0.00	2.232	10.68	1.65	6.9	92.8	0.3	2.16	2.47	0.59	0.76	2.07	21068	1260	4	0	0	0	10624	logfile
✔	3J9P	6267	2024-09-27	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	26.35	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.1	0.004	1.00	0.0	0.05	13.90	0.00	2.355	16.44	0.00	8.6	90.7	0.7	-1.91	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	3J9X	6310	2024-09-27	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	14.92	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.45	3.8	0.004	0.78	0.0	0.04	17.29	0.01	2.258	17.58	1.79	2.4	97.6	0.0	1.69	1.17	0.63	0.79	2.00	70702	7424	60	696	0	0	0	logfile
✔	4Ui9	2924	2024-09-27	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.43	0.00	2.213	11.88	3.23	5.4	94.2	0.4	0.76	2.86	0.89	0.83	1.12	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2024-09-25	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-1.97	0.50	0.56	—	4.4	0.004	0.84	0.0	0.04	12.18	0.00	2.476	12.80	0.00	9.5	89.1	1.3	-1.94	1.66	0.55	0.74	—	8518	791	10	0	458	0	0	logfile
✔	3JAC	6343	2024-09-27	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.07	13.28	0.01	2.047	64.31	0.00	24.4	74.1	1.6	-5.24	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAD	6344	2024-09-26	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	10.08	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.78	0.0	0.04	12.57	0.00	2.472	12.79	2.16	3.8	96.2	0.0	0.82	0.71	0.70	0.77	0.16	12705	1685	15	0	15	0	0	logfile
✔	3JAF	6346	2024-09-26	2015-06-08	3.8	2.26	—	3.8	0.006	1.34	0.0	0.06	18.83	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.004	0.90	0.0	0.04	13.62	0.00	2.367	15.73	1.62	3.0	97.0	0.0	0.51	1.37	0.72	0.81	1.40	13865	1710	15	0	15	0	0	logfile
✔	3JAE	6345	2024-09-26	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.72	0.01	2.038	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.89	0.0	0.05	13.97	0.00	2.548	12.28	1.22	2.6	97.4	0.0	0.32	0.85	0.72	0.82	1.74	12825	1690	10	0	10	0	0	logfile
✔	3JAM	3047	2024-09-29	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	25.28	0.01	1.398	7.14	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.003	0.71	0.0	0.04	23.82	0.01	1.880	9.59	5.49	8.9	90.1	1.0	-0.86	0.69	0.67	0.86	1.52	77850	5056	42	1780	83	0	0	logfile
✔	5A63	3061	2024-09-25	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.69	8.0	0.11	20.48	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.004	0.78	0.0	0.05	17.59	0.00	2.394	12.49	5.44	6.0	93.8	0.2	0.12	2.91	0.62	0.82	1.60	10003	1223	13	0	22	0	0	logfile
✔	5A6E	3062	2024-09-26	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.002	0.56	0.0	0.03	10.40	0.00	2.249	6.20	0.00	5.1	94.9	0.0	-0.28	1.44	0.38	0.66	—	11093	634	4	0	182	0	5102	logfile
✔	5A6F	3063	2024-09-25	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.6	0.004	0.59	0.0	0.04	10.84	0.00	2.290	7.50	0.00	6.4	93.6	0.0	-0.98	0.94	0.57	0.76	—	8881	540	2	0	43	0	4330	logfile
✔	5A8L	3099	2024-09-26	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	21.13	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.004	0.77	0.0	0.04	22.97	0.01	2.453	13.44	5.69	11.1	87.8	1.1	-2.47	1.86	0.23	0.62	0.61	12264	624	9	347	0	0	0	logfile
✔	3JB6	6408	2024-09-26	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.29	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.59	0.0	0.04	15.13	0.00	2.422	4.67	1.93	2.1	97.9	0.0	0.73	1.18	0.62	0.88	3.66	13904	1731	6	0	2	0	0	logfile
✔	3JB7	6404	2024-09-27	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	11.60	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.67	0.0	0.04	15.90	0.00	2.468	8.41	3.05	2.9	97.0	0.1	0.46	0.82	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile

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