Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G3K	29700	2024-09-23	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.004	0.55	0.0	0.04	16.87	0.00	2.619	3.72	1.65	0.7	99.3	0.0	4.33	1.14	0.47	0.84	5.18	2244	285	2	0	0	0	0	logfile
✔	8oLN	16959	2024-09-23	2023-03-30	3.3	3.38	2.68	3.7	0.002	0.48	0.0	0.04	9.04	0.00	2.271	10.63	2.41	8.2	91.8	0.0	-4.24	0.41	0.82	4.41	3.5	0.004	0.61	0.0	0.05	17.31	0.00	2.558	13.15	7.93	5.3	94.7	0.0	-4.45	2.86	0.39	0.80	3.45	2830	360	10	0	0	0	0	logfile
✔	8Q7M	18224	2024-09-23	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.005	0.75	0.0	0.05	15.14	0.00	2.612	4.41	1.54	2.0	98.0	0.0	-2.04	0.91	0.36	0.87	3.57	5109	669	9	0	0	0	0	logfile
✔	8QD0	18339	2024-09-23	2023-08-28	2.8	3.36	2.79	3.2	0.003	0.63	0.0	0.04	15.30	0.01	2.337	5.83	0.00	1.0	99.0	0.0	1.25	0.61	0.81	3.08	3.2	0.003	0.66	0.0	0.04	16.27	0.00	2.466	6.72	1.13	1.2	98.8	0.0	2.37	1.71	0.51	0.75	2.75	3290	422	2	0	1	0	0	logfile
✔	8JPF	36478	2024-09-23	2023-06-11	3.02	3.21	3.41	3.3	0.008	0.81	0.0	0.04	18.98	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.69	0.0	0.04	17.63	0.00	2.460	6.81	3.21	3.0	97.0	0.0	1.74	0.94	0.45	0.78	2.35	2269	304	3	0	1	0	0	logfile
✔	8JTA	36638	2024-09-23	2023-06-21	3.36	3.64	3.38	3.6	0.013	1.26	0.0	0.07	14.05	0.01	2.320	7.70	2.67	5.5	94.5	0.0	-2.72	0.63	0.85	1.70	3.6	0.003	0.77	0.0	0.04	15.44	0.01	2.489	5.82	5.00	3.4	96.6	0.0	1.26	0.49	0.62	0.87	1.61	2879	386	2	0	1	0	0	logfile
✔	8HRN	34979	2024-09-23	2022-12-15	3.9	4.18	3.98	4.0	0.005	0.91	0.0	0.05	17.07	0.01	2.080	24.49	0.95	3.4	96.6	0.0	-1.15	0.76	0.69	0.78	4.0	0.003	0.74	0.0	0.04	17.91	0.00	2.559	13.46	3.61	2.9	97.1	0.0	-0.20	1.18	0.76	0.69	0.49	4870	597	1	0	0	0	0	logfile
✔	9CMH	45748	2024-09-23	2024-07-15	4.0	4.53	4.03	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	4.1	0.003	0.78	0.0	0.04	15.85	0.00	2.523	19.55	4.09	4.5	95.5	0.0	-0.93	1.42	0.62	0.68	—	3553	466	2	0	0	0	0	logfile
✔	8EHX	28154	2024-09-23	2022-09-14	3.6	3.90	3.67	3.9	0.005	0.80	0.0	0.05	17.02	0.01	2.214	13.59	0.00	8.5	91.3	0.2	0.14	0.58	0.79	0.78	3.9	0.003	0.70	0.0	0.04	17.71	0.00	2.601	8.68	3.74	6.6	93.3	0.2	1.21	1.53	0.56	0.78	1.01	5153	631	1	0	0	0	0	logfile
✔	8Q7F	18215	2024-09-23	2023-08-16	3.72	2.86	3.58	3.2	0.011	1.88	2.0	0.10	12.87	0.01	2.492	0.00	0.00	1.1	98.9	0.0	-1.74	0.32	0.74	3.87	3.2	0.004	0.72	0.0	0.05	16.00	0.00	2.486	7.65	1.79	0.7	99.3	0.0	-1.67	0.78	0.39	0.81	3.82	3402	450	6	0	0	0	0	logfile
✔	8XCV	38256	2024-09-23	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.89	0.00	2.544	5.62	0.59	2.2	97.8	0.0	1.78	0.85	0.48	0.91	4.40	3310	415	2	0	1	7	0	logfile
✔	8oLo	16960	2024-09-23	2023-03-30	3.5	3.16	3.18	3.4	0.005	0.87	0.0	0.07	11.69	0.01	2.375	9.87	0.00	6.9	93.1	0.0	-3.19	0.37	0.76	5.66	3.2	0.008	0.85	0.0	0.06	17.55	0.00	2.502	11.80	5.42	6.9	93.1	0.0	-3.35	1.83	0.39	0.79	2.69	2330	310	10	0	0	0	0	logfile
✔	8EKD	28199	2024-09-23	2022-09-20	3.6	3.11	3.47	3.0	0.005	0.88	0.0	0.05	19.66	0.01	2.190	21.00	1.77	6.3	93.7	0.0	-1.67	0.49	0.63	1.30	3.1	0.004	0.77	0.0	0.05	17.43	0.01	2.533	16.42	7.08	6.8	93.2	0.0	-1.24	1.35	0.50	0.64	1.47	3239	411	4	0	1	0	0	logfile
✔	8SDZ	40355	2024-09-23	2023-04-07	2.86	3.25	2.87	3.2	0.003	0.59	0.0	0.04	16.55	0.00	2.135	4.33	1.43	0.8	99.2	0.0	0.91	0.56	0.82	2.83	3.2	0.005	0.62	0.0	0.04	16.61	0.00	2.607	4.71	3.57	1.4	98.6	0.0	1.74	0.42	0.59	0.84	2.65	3913	500	2	0	1	22	0	logfile
✔	8QCT	18335	2024-09-23	2023-08-28	2.6	2.36	2.57	2.6	0.003	0.49	0.0	0.04	15.84	0.00	2.202	7.25	0.00	1.9	98.1	0.0	0.55	0.69	0.84	3.34	2.6	0.003	0.56	0.0	0.04	16.12	0.00	2.419	6.49	2.26	2.6	97.4	0.0	2.41	0.27	0.68	0.83	2.90	3259	418	2	0	1	0	0	logfile
✔	8DZW	27808	2024-09-23	2022-08-08	2.46	2.76	2.62	2.8	0.007	1.16	9.0	0.06	14.16	0.01	2.112	3.13	1.29	5.5	94.4	0.1	-0.58	0.71	0.81	3.50	2.7	0.005	0.80	1.0	0.05	15.66	0.00	2.091	2.21	1.16	5.3	94.7	0.0	-0.51	1.64	0.71	0.84	3.18	40250	2655	9	0	0	0	20048	logfile
✔	8i6J	35199	2024-09-23	2023-01-28	3.82	4.03	3.74	4.0	0.003	0.70	0.0	0.05	14.72	0.00	2.265	7.93	0.17	9.6	90.4	0.0	-0.94	0.63	0.71	0.83	4.0	0.003	0.71	0.0	0.04	16.80	0.00	2.492	7.56	2.75	9.6	90.4	0.0	-0.70	0.51	0.62	0.71	0.58	5287	670	3	0	1	0	0	logfile
✔	8ZWH	60527	2024-09-23	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.002	0.54	0.0	0.05	11.67	0.00	2.575	6.43	0.88	5.0	95.0	0.0	-3.11	1.18	0.43	0.84	3.55	2268	330	6	0	0	0	0	logfile
✔	8GHB	40039	2024-09-23	2023-03-09	2.76	3.35	2.85	3.2	0.006	0.82	0.0	0.05	13.62	0.01	2.072	4.28	0.00	2.8	97.2	0.0	-1.16	0.77	0.86	3.31	3.2	0.004	0.65	0.0	0.04	16.45	0.00	2.494	8.18	3.34	1.7	98.3	0.0	1.05	0.97	0.79	0.88	2.81	5289	658	2	0	1	0	0	logfile
✔	8oL7	16953	2024-09-23	2023-03-30	3.0	3.28	2.45	3.4	0.006	0.81	0.0	0.07	13.04	0.00	2.619	10.11	0.00	3.3	96.7	0.0	-2.92	0.50	0.79	5.15	3.3	0.004	0.66	0.0	0.06	15.60	0.00	2.632	12.26	0.43	4.7	95.3	0.0	-2.71	0.56	0.43	0.80	5.84	2320	320	10	0	0	0	0	logfile

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