Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FKJ	29250	2024-09-30	2022-12-21	4.2	4.36	4.26	4.0	0.003	0.66	0.0	0.04	5.09	0.00	2.167	6.77	0.00	9.9	89.9	0.1	-0.50	0.66	0.65	—	4.1	0.002	0.55	0.0	0.04	4.28	0.00	2.407	2.87	0.00	9.0	90.9	0.1	-0.16	0.45	0.66	0.67	—	25001	5088	27	0	0	0	0	logfile
✔	6oLK	20115	2024-09-28	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.003	0.67	0.0	0.04	4.61	0.00	2.596	2.69	0.00	7.2	92.8	0.0	-0.30	1.33	0.61	0.57	—	10323	2094	6	0	0	0	0	logfile
✔	8ViB	43256	2024-09-23	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.004	0.79	0.0	0.04	5.91	0.00	2.425	9.23	0.00	11.5	88.1	0.5	-1.43	2.86	0.49	0.83	—	4421	888	6	0	7	0	0	logfile
✔	6SH4	10193	2024-09-26	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.70	0.0	0.04	4.38	0.00	2.612	0.37	0.00	7.8	92.2	0.0	0.03	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	8DXR	27774	2024-09-25	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.48	0.0	0.04	2.98	0.00	2.602	0.60	0.00	5.1	94.8	0.1	1.93	0.41	0.67	0.70	—	10435	2101	7	0	0	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	8SLE	40577	2024-09-28	2023-04-21	4.3	4.73	4.56	4.2	0.005	0.90	0.0	0.05	5.48	0.00	1.914	8.93	0.00	6.1	93.9	0.0	-1.98	0.62	0.61	—	4.2	0.005	0.72	0.0	0.04	5.77	0.00	2.437	3.38	0.00	9.0	91.0	0.0	-1.03	1.44	0.62	0.68	—	17388	3468	4	0	0	0	0	logfile
✔	8CGL	16647	2024-09-30	2023-02-05	4.1	6.82	4.33	4.1	0.008	1.07	4.0	0.07	5.62	0.01	2.267	9.85	4.00	7.0	92.8	0.2	-0.82	0.83	0.66	—	4.2	0.004	0.72	0.0	0.05	4.76	0.00	2.395	4.90	0.00	9.2	90.8	0.0	-0.62	1.41	0.90	0.82	—	16732	2212	4	0	0	0	5572	logfile
✔	6CoZ	7545	2024-09-23	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.75	0.0	0.04	4.73	0.00	2.618	2.65	0.00	5.8	94.2	0.0	-0.93	1.54	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	6SH5	10194	2024-09-26	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.003	0.76	0.0	0.04	4.58	0.00	2.594	2.53	0.00	9.0	91.0	0.0	-2.95	1.62	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile
✔	7N9Q	24259	2024-09-24	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	6ZGG	11205	2024-09-30	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.003	0.65	0.0	0.04	11.39	0.00	2.442	5.49	2.00	4.6	95.4	0.0	-0.58	1.76	0.87	0.82	1.20	25096	3207	3	0	0	0	0	logfile
✔	5VCA	8659	2024-09-27	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.003	0.67	0.0	0.04	5.07	0.00	2.223	2.32	0.00	12.2	87.8	0.0	-0.77	2.90	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile
✔	7N9Y	24264	2024-09-24	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	8i6Q	35203	2024-09-23	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	4.2	0.004	0.66	0.0	0.04	5.02	0.00	2.419	6.00	0.00	9.1	90.8	0.1	-0.66	0.42	0.68	0.82	—	3975	810	4	0	0	0	0	logfile
✔	8PS8	17846	2024-09-28	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.63	0.0	0.04	4.23	0.00	2.532	1.62	0.00	6.9	93.1	0.0	0.14	0.65	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	7YLU	33917	2024-09-27	2022-07-27	4.55	4.26	5.68	4.4	0.002	0.44	0.0	0.04	6.30	0.00	1.304	3.45	0.11	1.9	98.0	0.1	2.63	0.69	0.62	—	4.4	0.003	0.72	0.0	0.05	11.24	0.00	2.322	14.24	0.03	3.8	96.1	0.1	0.32	1.15	0.74	0.71	—	65607	8578	17	0	0	0	0	logfile
✔	8HK3	34843	2024-09-24	2022-11-24	3.2	2.28	3.11	2.1	0.002	0.42	0.0	0.04	6.31	0.00	2.069	3.40	0.11	0.9	99.1	0.0	-1.02	0.74	0.73	3.34	2.2	0.003	0.59	0.0	0.04	13.55	0.00	2.528	4.55	2.24	3.1	96.9	0.0	1.06	1.20	0.77	0.79	2.95	8746	1135	5	0	0	0	0	logfile
✔	7WD8	32434	2024-09-23	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.71	0.0	0.04	12.43	0.00	2.558	10.69	0.00	4.5	95.3	0.2	-0.06	1.60	0.63	0.66	—	4029	524	4	0	0	0	0	logfile

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