Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PVB	17960	2024-09-28	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.002	0.56	0.0	0.04	14.83	0.00	0.000	4.69	1.37	0.8	99.2	0.0	1.21	0.99	0.72	0.83	3.89	19225	2275	25	0	80	0	0	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✔	7EFC	31083	2024-09-23	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.004	0.77	0.0	0.05	14.45	0.00	2.635	4.29	0.27	4.2	95.8	0.0	-0.32	0.47	0.80	0.85	6.72	4004	480	8	0	4	156	0	logfile
✔	7EFD	31084	2024-09-23	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.76	0.0	0.05	14.63	0.00	2.592	3.49	0.00	4.0	96.0	0.0	0.85	0.48	0.80	0.84	6.22	4004	480	8	0	4	156	0	logfile
✔	6ZP7	11337	2024-09-29	2020-07-08	3.3	4.01	3.43	3.7	0.013	0.92	0.0	0.17	16.89	0.00	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	3.7	0.004	0.78	0.0	0.08	14.66	0.00	1.946	8.69	2.23	3.7	96.3	0.0	0.14	1.33	0.81	0.84	2.07	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2024-09-29	2020-07-08	3.1	3.90	3.32	3.6	0.013	0.92	0.0	0.15	16.89	0.00	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.76	0.0	0.08	14.48	0.00	1.956	7.25	2.15	3.3	96.7	0.0	0.26	0.67	0.82	0.84	2.04	23615	2861	33	0	92	0	0	logfile
✔	8AZS	15770	2024-09-24	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.2	0.028	4.05	31.0	0.17	24.42	0.02	2.053	345.81	15.67	48.7	44.4	6.9	-8.17	17.49	0.18	0.16	-0.10	9036	1224	36	0	0	0	0	logfile
✔	5Li4	4052	2024-09-28	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	14.11	0.01	2.275	24.65	0.00	15.2	83.7	1.1	-3.90	4.20	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7XDi	33148	2024-09-24	2022-03-27	3.8	3.93	3.63	3.9	0.003	0.71	0.0	0.04	16.85	0.01	0.137	25.88	0.56	4.7	94.6	0.6	0.46	0.58	0.82	1.80	3.9	0.004	0.76	0.0	0.04	17.51	0.01	2.303	13.32	6.08	5.2	94.2	0.6	0.68	1.34	0.58	0.82	1.60	53669	6804	42	0	0	0	0	logfile
✔	5o09	3726	2024-09-28	2017-05-16	3.6	3.66	—	3.7	0.014	1.48	32.0	0.10	13.27	0.01	0.180	18.46	1.36	6.3	92.8	0.8	-4.52	0.53	0.60	0.71	3.6	0.004	0.80	0.0	0.04	16.91	0.00	2.388	16.76	2.79	5.2	94.8	0.0	-0.82	1.62	0.60	0.75	1.19	67424	8648	40	16	0	0	0	logfile
✔	5M32	4146	2024-09-29	2016-10-14	3.8	3.96	—	3.8	0.009	1.47	12.0	0.07	13.19	0.01	0.185	19.65	3.10	14.4	83.9	1.7	-5.42	0.81	0.79	1.92	3.8	0.003	0.87	0.0	0.05	15.02	0.01	1.931	12.93	3.11	10.9	88.8	0.3	-1.94	1.49	0.83	0.81	1.27	76085	10500	54	0	8	0	0	logfile
✔	5ND1	3619	2024-09-27	2017-03-07	3.7	3.86	—	3.9	0.017	2.27	54.0	0.15	22.44	0.01	0.204	100.40	32.66	7.8	89.7	2.5	-2.95	0.47	0.82	1.08	3.9	0.003	0.82	0.0	0.04	18.49	0.00	2.418	11.54	6.93	8.6	90.9	0.5	-1.97	0.83	0.48	0.83	0.95	14963	1977	2	0	0	0	0	logfile
✔	8RKB	19267	2024-09-24	2023-12-23	3.12	2.74	3.26	3.0	0.003	0.50	0.0	0.03	13.64	0.00	0.214	21.59	0.00	4.5	95.4	0.2	2.03	0.65	0.68	0.98	3.0	0.003	0.62	0.0	0.04	16.87	0.00	2.523	6.10	2.20	4.0	95.8	0.2	1.83	0.94	0.77	0.85	2.46	50484	6504	24	0	0	0	0	logfile
✔	6G51	4350	2024-09-24	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	23.12	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.004	0.77	0.0	0.04	23.21	0.00	2.412	6.53	0.00	9.8	90.1	0.0	-1.29	1.52	0.80	0.69	—	50662	6237	38	1659	0	0	0	logfile
✔	6CB1	7445	2024-09-28	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	23.83	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.67	0.66	0.49	—	4.5	0.003	0.71	0.0	0.04	23.68	0.00	2.075	14.11	0.00	7.8	92.1	0.0	-0.82	1.99	0.75	0.75	—	69945	6459	45	1615	694	0	0	logfile
✔	8SEW	40431	2024-09-29	2023-04-10	2.89	2.97	2.87	3.0	0.004	0.59	0.0	0.04	12.56	0.00	0.267	5.77	2.14	2.1	97.7	0.2	1.93	0.60	0.79	2.44	3.0	0.003	0.59	0.0	0.04	16.47	0.00	2.470	4.62	2.63	1.8	98.2	0.0	2.06	0.57	0.60	0.81	2.14	20716	2516	8	0	8	0	0	logfile
✔	8DMG	27536	2024-09-28	2022-07-08	4.4	5.39	4.50	4.6	0.029	2.33	20.0	0.12	16.95	0.01	0.312	28.72	6.80	6.0	92.3	1.7	-2.43	0.79	0.61	—	4.6	0.006	0.96	0.0	0.04	13.80	0.01	2.149	84.69	0.00	7.0	92.9	0.0	-0.13	2.25	0.93	0.85	—	16844	2068	4	0	18	0	202	logfile
✔	6S61	10101	2024-09-28	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.62	0.0	0.04	14.89	0.00	2.160	2.50	0.65	1.3	98.7	0.0	4.32	0.78	0.80	0.90	8.67	71060	4128	72	0	30	3854	32904	logfile
✔	6TA3	10421	2024-09-25	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.96	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.89	0.0	0.05	18.13	0.01	1.577	25.33	3.79	3.5	96.5	0.0	-0.26	2.45	0.78	0.73	0.35	9491	1201	6	0	5	0	0	logfile
✔	6GJ1	0009	2024-09-26	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.004	0.88	0.0	0.05	12.53	0.01	2.430	19.93	0.00	15.5	84.4	0.1	-3.56	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile

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