Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E2F	27834	2024-09-26	2022-08-15	2.47	2.75	2.45	2.7	0.003	0.62	0.0	0.04	16.35	0.00	2.040	6.66	1.58	3.0	97.0	0.0	1.05	0.58	0.82	4.21	2.7	0.004	0.58	0.0	0.04	16.76	0.00	2.131	5.36	2.16	2.8	97.2	0.0	1.42	0.31	0.61	0.83	3.79	12305	771	1	0	0	0	6207	logfile
✔	7XTK	33451	2024-09-23	2022-05-17	2.89	3.27	2.92	3.2	0.004	0.87	0.0	0.04	13.37	0.01	1.873	9.37	0.00	6.4	92.3	1.3	-1.05	0.59	0.83	2.77	3.2	0.004	0.68	0.0	0.04	15.06	0.01	2.569	7.81	1.18	7.9	91.6	0.5	0.71	1.73	0.57	0.84	2.06	3159	395	1	0	0	0	0	logfile
✔	8E2G	27835	2024-09-24	2022-08-15	2.99	3.17	3.03	3.1	0.003	0.60	0.0	0.04	15.68	0.00	1.928	12.10	2.42	6.4	93.6	0.0	-1.77	0.46	0.74	2.37	3.1	0.003	0.61	0.0	0.04	15.93	0.01	2.328	10.37	1.54	8.5	91.5	0.0	-1.65	1.01	0.47	0.74	2.26	8110	523	1	0	0	0	4078	logfile
✔	8Q3F	18126	2024-09-23	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.002	0.56	0.0	0.04	15.76	0.00	2.640	3.89	0.99	1.6	98.4	0.0	1.54	0.93	0.90	0.81	0.79	4599	578	1	0	0	0	0	logfile
✔	7TDT	25838	2024-09-27	2022-01-03	4.0	4.13	—	4.0	0.002	0.57	0.0	0.04	13.40	0.00	1.908	10.09	0.00	8.2	91.7	0.1	-0.53	0.63	0.69	—	4.0	0.003	0.86	0.0	0.05	16.24	0.00	2.472	13.16	2.12	9.0	91.0	0.0	-1.25	1.34	0.65	0.73	—	14444	1818	1	0	0	0	0	logfile
✔	8AFX	15411	2024-09-23	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.73	0.0	0.05	12.03	0.00	2.612	10.54	0.00	6.8	93.2	0.0	-1.16	0.58	0.74	0.80	—	2498	321	1	0	0	0	0	logfile
✔	6FU8	4319	2024-09-23	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.76	0.0	0.04	15.90	0.00	2.426	9.53	0.00	8.8	90.0	1.2	-2.74	3.88	0.23	0.62	0.61	1364	82	1	0	0	0	711	logfile
✔	7BC5	12139	2024-09-23	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.70	0.0	0.04	16.90	0.00	2.565	11.94	3.05	8.2	91.8	0.0	-2.99	1.28	0.23	0.58	1.60	1200	161	1	0	0	0	0	logfile
✔	8Q73	18202	2024-09-23	2023-08-15	3.58	5.00	3.87	4.6	0.004	0.92	0.0	0.05	14.50	0.01	2.243	12.12	0.00	12.6	86.4	1.0	-2.53	0.65	0.76	0.56	4.6	0.004	0.86	0.0	0.05	16.21	0.00	2.502	15.38	1.86	12.2	86.9	0.9	-1.62	1.07	0.66	0.79	0.56	5909	779	1	0	0	0	0	logfile
✔	7UiU	26553	2024-09-23	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.005	0.99	0.0	0.05	18.07	0.00	2.508	8.38	1.67	6.0	94.0	0.0	-2.59	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7YXY	14369	2024-09-26	2022-02-16	3.1	3.25	3.02	3.1	0.003	0.59	0.0	0.04	13.93	0.00	2.219	10.79	0.00	4.9	95.0	0.1	0.42	0.64	0.78	1.95	3.1	0.003	0.63	0.0	0.04	15.79	0.00	2.313	9.62	1.05	4.5	95.5	0.1	0.72	0.46	0.64	0.80	1.80	14031	1739	1	0	0	0	0	logfile
✔	8F7J	28905	2024-09-23	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.005	0.92	0.0	0.05	14.34	0.01	2.486	27.01	0.00	11.1	88.9	0.0	-3.32	2.96	0.45	0.47	—	3321	407	1	0	0	0	0	logfile
✔	8P6A	17462	2024-09-23	2023-05-25	3.63	3.93	3.43	3.9	0.003	0.66	0.0	0.04	17.40	0.00	2.161	10.48	0.29	2.4	97.6	0.0	2.80	0.57	0.81	1.41	3.9	0.004	0.66	0.0	0.04	17.65	0.00	2.568	9.01	5.19	3.1	96.9	0.0	2.79	0.86	0.58	0.82	1.06	3337	432	1	0	0	0	0	logfile
✔	8SiB	40505	2024-09-23	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.90	0.0	0.05	15.76	0.00	2.459	9.52	2.33	13.1	86.2	0.7	-1.44	2.03	0.71	0.83	2.66	3544	454	1	0	0	0	0	logfile
✔	7Wo9	32643	2024-09-26	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.003	0.53	0.0	0.04	15.82	0.00	2.433	4.85	0.74	4.7	95.3	0.0	1.89	0.74	0.72	0.80	1.97	12743	1581	1	0	0	0	0	logfile
✔	6YJ5	10816	2024-09-23	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.005	0.75	0.0	0.05	15.14	0.01	2.499	8.18	3.68	10.9	89.1	0.0	-2.20	0.73	0.51	0.73	2.60	2061	306	1	0	0	0	0	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7N9Q	24259	2024-09-24	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7YQM	34029	2024-09-23	2022-08-08	2.89	3.15	2.89	3.2	0.005	0.58	0.0	0.05	11.88	0.00	2.294	1.86	0.17	4.7	95.3	0.0	-0.02	0.67	0.78	4.18	3.2	0.003	0.55	0.0	0.04	15.66	0.00	2.623	5.33	1.17	3.7	96.3	0.0	0.64	1.48	0.68	0.80	3.46	5656	723	1	0	0	0	0	logfile
✔	7Y49	33604	2024-09-24	2022-06-14	3.67	2.35	3.54	2.2	0.003	0.59	0.0	0.04	14.27	0.00	2.317	5.03	0.47	3.8	96.2	0.0	0.44	0.49	0.66	2.02	2.2	0.004	0.59	0.0	0.04	15.98	0.00	2.541	4.31	2.12	4.5	95.3	0.2	0.39	0.92	0.49	0.69	1.50	4169	565	1	0	0	0	0	logfile

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