Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DWi	27755	2024-09-23	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.75	0.0	0.04	16.60	0.01	2.552	10.92	1.91	5.5	94.5	0.0	-0.61	1.64	0.47	0.71	2.20	3192	424	1	0	0	0	0	logfile
✔	8FDG	29011	2024-09-26	2022-12-03	3.2	3.62	—	3.5	0.003	0.68	0.0	0.05	14.00	0.01	2.166	10.24	0.00	11.9	88.1	0.0	-2.81	0.72	0.77	2.13	3.5	0.003	0.68	0.0	0.05	16.19	0.00	2.494	7.23	2.60	11.2	88.8	0.1	-2.71	0.45	0.72	0.78	1.81	12163	1505	1	0	0	0	0	logfile
✔	6L53	0836	2024-09-26	2019-10-22	3.63	3.79	—	3.7	0.002	0.69	0.0	0.04	9.71	0.00	2.193	8.74	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	3.7	0.005	1.09	1.0	0.05	14.56	0.01	2.222	15.60	3.49	12.3	87.7	0.1	-2.78	0.85	0.80	0.74	1.01	13991	1935	1	0	0	0	0	logfile
✔	7WHN	32505	2024-09-25	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.24	0.00	2.536	4.82	1.15	2.1	97.9	0.0	0.93	0.37	0.37	0.81	2.44	9284	1170	1	0	0	0	0	logfile
✔	7FAS	31505	2024-09-25	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.55	0.0	0.04	17.48	0.00	2.528	7.35	2.14	4.8	95.2	0.0	0.89	1.13	0.73	0.75	0.83	10173	1229	1	0	0	0	0	logfile
✔	7QFQ	13947	2024-09-25	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.004	0.58	0.0	0.04	14.90	0.00	2.484	7.17	1.51	6.9	93.1	0.0	-0.96	0.38	0.68	0.74	1.31	10659	1291	1	0	0	0	0	logfile
✔	8RQ3	19431	2024-09-25	2024-01-17	3.21	3.47	3.25	3.5	0.009	0.81	0.0	0.05	14.58	0.00	2.149	9.58	0.00	6.2	93.8	0.0	-0.39	0.61	0.85	2.21	3.5	0.003	0.58	0.0	0.04	16.43	0.00	2.521	5.42	1.81	4.2	95.8	0.0	1.69	0.73	0.54	0.82	1.16	11375	1432	1	0	0	0	0	logfile
✔	3JBS	6478	2024-09-23	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.64	0.0	0.04	18.35	0.00	2.655	5.51	3.95	1.7	98.3	0.0	0.93	1.82	0.21	0.81	3.78	1401	175	1	0	0	0	0	logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile
✔	7XPZ	33386	2024-09-23	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.003	0.66	0.0	0.04	14.17	0.00	2.571	5.96	2.31	4.8	95.2	0.0	-0.96	1.15	0.45	0.77	2.31	3227	402	1	0	0	0	0	logfile
✔	8E27	27827	2024-09-23	2022-08-14	3.4	3.73	3.56	3.7	0.010	1.10	0.0	0.07	14.24	0.01	2.297	2.69	0.34	1.2	98.8	0.0	-0.92	0.71	0.84	2.46	3.7	0.003	0.58	0.0	0.04	16.23	0.00	2.583	3.71	1.69	2.5	97.5	0.0	0.45	0.53	0.69	0.84	2.44	5371	676	1	0	0	0	0	logfile
✔	7KVF	23049	2024-09-25	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	3.6	0.003	0.83	0.0	0.05	16.27	0.01	2.361	14.68	1.96	12.1	87.9	0.0	-3.72	2.39	0.87	0.76	0.76	11142	1374	1	0	0	0	0	logfile
✔	8CK0	16688	2024-09-23	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.09	0.00	2.414	9.25	4.11	3.6	96.4	0.0	2.05	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile
✔	7M69	23691	2024-09-29	2021-03-25	3.42	4.12	4.11	4.1	0.006	0.87	0.0	0.04	13.25	0.01	2.304	0.82	1.29	5.1	94.9	0.0	-0.08	0.52	0.70	1.11	4.1	0.004	0.61	0.0	0.04	15.58	0.00	2.145	9.48	2.57	6.1	93.9	0.1	1.17	1.00	0.53	0.72	1.01	21795	1390	1	0	0	0	10912	logfile
✔	7KVE	23048	2024-09-25	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.69	0.0	0.04	16.39	0.01	2.273	7.84	2.69	11.5	88.5	0.0	-3.84	0.48	0.75	0.73	2.23	11142	1374	1	0	0	0	0	logfile
✔	7DCQ	30639	2024-09-23	2020-10-26	2.9	3.09	—	3.1	0.006	0.95	1.0	0.06	10.61	0.01	2.378	4.64	0.85	4.1	95.9	0.0	-3.49	0.70	0.81	4.02	3.1	0.004	1.09	1.0	0.05	15.83	0.00	2.312	9.10	2.21	3.8	96.2	0.0	0.75	0.64	0.69	0.83	3.27	5197	653	1	0	0	0	0	logfile
✔	7M68	23690	2024-09-29	2021-03-25	4.04	4.54	4.34	4.5	0.005	0.75	0.0	0.04	13.49	0.00	2.358	1.05	0.60	5.8	94.2	0.0	-0.08	0.51	0.70	—	4.5	0.002	0.54	0.0	0.04	13.45	0.00	2.377	7.10	0.00	5.3	94.7	0.0	1.01	1.39	0.51	0.71	—	21820	1390	1	0	0	0	10933	logfile
✔	7RSQ	24677	2024-09-23	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.53	0.0	0.03	15.39	0.00	2.533	2.26	0.96	3.0	97.0	0.0	2.06	1.76	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	7XW3	33490	2024-09-26	2022-05-26	4.04	4.31	4.11	4.2	0.009	1.24	4.0	0.07	16.20	0.01	2.218	16.13	2.51	8.4	91.5	0.1	-4.09	0.72	0.64	—	4.2	0.003	0.67	0.0	0.04	14.93	0.00	2.358	9.47	0.00	4.8	95.2	0.0	-0.95	1.35	0.71	0.63	—	12081	1502	1	0	0	0	0	logfile
✔	8WUA	37852	2024-09-23	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.95	0.00	2.577	8.87	2.96	6.1	93.9	0.0	0.48	1.82	0.54	0.69	1.15	5494	675	1	0	0	0	0	logfile

• Page 1 of 506
• next →