Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SC1	40334	2024-09-23	2023-04-04	2.92	3.14	2.89	3.2	0.003	0.68	0.0	0.04	10.47	0.01	2.266	1.15	0.00	2.5	97.5	0.0	-0.78	0.58	0.81	2.42	3.2	0.002	0.56	0.0	0.03	13.85	0.00	2.555	2.45	2.16	1.1	98.9	0.0	2.62	1.98	0.60	0.82	1.11	3447	446	1	0	0	0	0	logfile
✔	8QCS	18334	2024-09-23	2023-08-28	2.9	3.25	2.95	3.2	0.003	0.57	0.0	0.04	15.23	0.00	2.301	7.00	0.00	2.7	97.3	0.0	0.62	0.56	0.82	3.12	3.2	0.003	0.61	0.0	0.04	16.36	0.00	2.544	7.15	2.55	2.9	97.1	0.0	2.41	1.20	0.53	0.79	2.15	3241	417	1	0	0	0	0	logfile
✔	8PD5	17601	2024-09-24	2023-06-11	3.4	2.30	3.32	2.1	0.003	0.53	0.0	0.04	13.12	0.00	2.148	2.18	0.00	2.2	97.8	0.0	1.83	0.61	0.77	2.43	2.1	0.003	0.51	0.0	0.04	15.85	0.00	2.597	4.06	2.28	1.7	98.3	0.0	2.40	0.97	0.68	0.81	2.22	8093	1024	1	0	0	0	0	logfile
✔	8Woi	37690	2024-09-25	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.003	0.67	0.0	0.04	13.85	0.00	2.444	3.96	1.42	7.5	92.5	0.0	-2.63	0.64	0.68	0.85	2.63	9324	1217	1	0	0	0	0	logfile
✔	8SG4	40451	2024-09-26	2023-04-11	3.11	3.67	3.27	3.6	0.004	0.66	0.0	0.04	12.03	0.01	2.302	0.80	0.00	1.9	98.1	0.0	0.44	0.61	0.78	2.80	3.6	0.003	0.53	0.0	0.04	14.17	0.00	2.395	4.18	0.70	2.3	97.7	0.0	2.05	1.59	0.64	0.81	2.22	11715	1469	1	0	0	0	0	logfile
✔	8PQV	17825	2024-09-30	2023-07-12	4.0	3.78	3.91	3.6	0.005	0.88	0.0	0.05	18.62	0.01	2.216	5.82	0.53	3.0	96.9	0.1	-1.33	0.83	0.80	—	3.6	0.003	0.58	0.0	0.04	18.57	0.00	2.508	8.53	2.63	2.8	97.1	0.1	1.81	1.11	0.83	0.80	—	24122	2996	1	0	0	0	0	logfile
✔	8iZR	35869	2024-09-25	2023-04-07	3.62	4.12	3.84	4.0	0.013	2.00	38.0	0.13	17.09	0.01	2.376	13.47	14.34	3.1	96.8	0.1	0.34	0.63	0.73	1.05	4.0	0.003	0.75	0.0	0.04	17.16	0.00	2.448	10.80	4.03	2.0	98.0	0.0	1.08	0.89	0.65	0.79	0.61	11116	1400	1	0	0	0	0	logfile
✔	8ERC	28552	2024-09-23	2022-10-11	3.7	3.47	3.08	3.7	0.003	0.67	0.0	0.04	12.91	0.00	2.115	8.25	0.00	2.3	97.7	0.0	1.99	0.51	0.65	1.22	3.7	0.003	0.71	0.0	0.04	16.47	0.00	2.599	9.53	2.49	2.3	97.7	0.0	2.20	0.52	0.52	0.65	0.70	3510	441	1	0	0	0	0	logfile
✔	9AYB	43984	2024-09-23	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.003	0.54	0.0	0.04	14.43	0.00	2.603	3.57	1.42	1.4	98.6	0.0	1.80	0.33	0.43	0.79	1.91	3347	428	1	0	0	0	0	logfile
✔	8V85	43023	2024-09-23	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.93	0.0	0.05	13.63	0.00	2.434	26.60	0.58	4.6	95.4	0.0	-1.13	4.15	0.34	0.27	1.13	1539	197	1	0	0	0	0	logfile
✔	8B9L	15935	2024-09-26	2022-10-06	3.45	4.42	3.50	3.9	0.004	0.78	1.0	0.05	17.52	0.02	2.155	14.92	1.18	8.4	90.8	0.8	-0.21	0.77	0.59	0.69	4.0	0.003	0.92	1.0	0.05	17.44	0.01	2.505	16.90	2.89	7.7	91.5	0.8	-0.58	1.83	0.85	0.77	0.76	6826	862	1	0	0	0	0	logfile
✔	8VE7	43167	2024-09-23	2023-12-18	4.0	4.19	3.24	4.1	0.003	0.61	0.0	0.04	11.54	0.00	2.139	11.66	0.00	1.7	98.3	0.0	2.80	0.41	0.79	—	4.1	0.003	0.62	0.0	0.04	15.09	0.00	2.515	8.36	2.54	3.1	96.9	0.0	2.88	1.94	0.42	0.83	—	2264	294	1	0	0	0	0	logfile
✔	8W77	37336	2024-09-23	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.002	0.54	0.0	0.04	10.99	0.00	2.642	2.15	3.33	1.2	98.8	0.0	3.92	0.88	0.57	0.78	2.79	1601	260	1	0	0	0	0	logfile
✔	8P51	17436	2024-09-26	2023-05-23	3.55	4.39	3.63	4.0	0.006	0.83	0.0	0.05	13.50	0.01	2.113	4.21	0.00	4.4	95.6	0.0	-1.93	0.82	0.71	2.07	4.0	0.003	0.69	0.0	0.04	14.93	0.00	2.526	6.09	0.98	2.7	97.2	0.1	1.16	1.70	0.88	0.85	1.44	12389	1574	1	0	0	0	0	logfile
✔	8X5X	38074	2024-09-23	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.78	0.0	0.04	17.52	0.00	2.610	12.40	4.74	4.5	95.5	0.0	0.94	1.34	0.44	0.57	0.65	2105	256	1	0	0	0	0	logfile
✔	8U3E	41859	2024-09-23	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.78	0.01	2.625	3.73	1.14	3.5	96.5	0.0	1.21	0.40	0.51	0.85	3.12	3338	427	1	0	0	0	0	logfile
✔	8EDN	28037	2024-09-23	2022-09-05	3.8	3.47	3.75	3.3	0.002	0.58	0.0	0.04	11.31	0.00	2.205	6.81	0.46	5.7	94.1	0.2	2.77	0.65	0.60	0.13	3.3	0.003	0.63	0.0	0.04	13.94	0.00	2.509	7.58	1.84	4.3	95.5	0.2	2.35	1.13	0.70	0.72	1.96	3683	579	1	0	0	0	0	logfile
✔	8JY4	36719	2024-09-29	2023-07-02	3.58	4.95	3.68	4.2	0.003	0.55	0.0	0.04	15.96	0.00	1.980	6.92	0.00	3.0	96.9	0.1	-0.52	0.62	0.78	0.68	4.2	0.003	0.65	0.0	0.04	16.20	0.00	2.242	10.02	2.20	3.4	96.5	0.1	0.91	0.84	0.62	0.80	0.53	22246	1383	1	0	0	0	11252	logfile
✔	8XW4	38730	2024-09-23	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.78	0.0	0.04	16.95	0.00	2.517	10.76	3.81	8.0	92.0	0.0	0.17	0.57	0.54	0.77	0.82	5027	619	1	0	0	0	0	logfile
✔	8WJG	37579	2024-09-23	2023-09-25	3.0	3.18	2.87	3.3	0.005	1.21	0.0	0.06	15.28	0.01	2.211	6.71	2.03	2.6	97.4	0.0	0.84	0.51	0.73	1.85	3.3	0.003	0.70	0.0	0.04	16.31	0.00	2.591	9.11	2.03	2.1	97.9	0.0	1.85	0.44	0.50	0.74	2.39	3952	533	1	0	0	0	0	logfile

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