Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZC4	14619	2024-09-26	2022-03-25	3.24	2.31	3.25	3.4	0.003	0.66	0.0	0.04	15.19	0.00	2.152	12.98	0.00	3.6	96.4	0.0	2.81	0.64	0.60	1.74	3.4	0.003	0.63	0.0	0.04	16.53	0.00	2.588	11.33	1.30	3.0	97.0	0.0	2.29	1.15	0.68	0.65	1.77	7272	926	1	0	0	0	0	logfile
✔	7FJM	31623	2024-09-24	2021-08-04	3.3	3.57	—	3.5	0.014	1.57	16.0	0.12	11.98	0.01	2.194	5.81	3.44	9.2	90.3	0.5	-4.28	0.65	0.76	2.17	3.5	0.005	1.09	2.0	0.06	14.16	0.01	2.203	6.59	3.85	7.3	92.4	0.3	-1.56	1.68	0.66	0.83	1.43	7086	973	1	0	0	0	0	logfile
✔	8CK0	16688	2024-09-23	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.09	0.00	2.414	9.25	4.11	3.6	96.4	0.0	2.05	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile
✔	7KVE	23048	2024-09-25	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.69	0.0	0.04	16.39	0.01	2.273	7.84	2.69	11.5	88.5	0.0	-3.84	0.48	0.75	0.73	2.23	11142	1374	1	0	0	0	0	logfile
✔	7QFP	13946	2024-09-25	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.0	0.003	0.76	0.0	0.05	16.79	0.00	2.390	12.65	3.70	12.1	87.9	0.0	-2.86	0.74	0.85	0.76	0.33	9996	1233	1	0	0	0	0	logfile
✔	7N98	24252	2024-09-23	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.65	0.0	0.04	16.83	0.00	2.625	5.81	1.88	7.0	93.0	0.0	0.17	0.50	0.49	0.80	1.11	3625	473	1	0	0	0	0	logfile
✔	7RSQ	24677	2024-09-23	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.53	0.0	0.03	15.39	0.00	2.533	2.26	0.96	3.0	97.0	0.0	2.06	1.76	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	8E27	27827	2024-09-23	2022-08-14	3.4	3.73	3.56	3.7	0.010	1.10	0.0	0.07	14.24	0.01	2.297	2.69	0.34	1.2	98.8	0.0	-0.92	0.71	0.84	2.46	3.7	0.003	0.58	0.0	0.04	16.23	0.00	2.583	3.71	1.69	2.5	97.5	0.0	0.45	0.53	0.69	0.84	2.44	5371	676	1	0	0	0	0	logfile
✔	3JBS	6478	2024-09-23	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.64	0.0	0.04	18.35	0.00	2.655	5.51	3.95	1.7	98.3	0.0	0.93	1.82	0.21	0.81	3.78	1401	175	1	0	0	0	0	logfile
✔	6L53	0836	2024-09-26	2019-10-22	3.63	3.79	—	3.7	0.002	0.69	0.0	0.04	9.71	0.00	2.193	8.74	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	3.7	0.005	1.09	1.0	0.05	14.56	0.01	2.222	15.60	3.49	12.3	87.7	0.1	-2.78	0.85	0.80	0.74	1.01	13991	1935	1	0	0	0	0	logfile
✔	6XoS	22278	2024-09-24	2020-07-07	3.7	4.30	3.63	3.9	0.009	1.09	0.0	0.06	13.21	0.01	2.225	2.95	0.00	2.4	97.6	0.0	-1.45	0.89	0.82	1.85	3.9	0.003	0.76	0.0	0.04	14.53	0.00	2.473	7.40	0.70	2.1	97.9	0.0	1.44	0.99	0.89	0.85	1.78	7704	966	1	0	0	0	0	logfile
✔	7RYQ	24745	2024-09-23	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.77	0.0	0.05	14.03	0.01	2.393	13.97	0.00	5.8	94.2	0.0	0.03	1.21	0.85	0.76	—	4332	527	1	0	0	0	0	logfile
✔	6XoU	22280	2024-09-24	2020-07-07	4.0	4.67	4.02	4.1	0.005	1.06	0.0	0.06	13.63	0.01	2.261	4.13	0.23	2.8	97.2	0.0	-1.51	0.89	0.75	—	4.1	0.003	0.90	0.0	0.04	14.86	0.00	2.334	9.17	0.93	2.3	97.7	0.0	1.07	1.77	0.91	0.85	—	7697	965	1	0	0	0	0	logfile
✔	7WHN	32505	2024-09-25	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.24	0.00	2.536	4.82	1.15	2.1	97.9	0.0	0.93	0.37	0.37	0.81	2.44	9284	1170	1	0	0	0	0	logfile
✔	8WUA	37852	2024-09-23	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.95	0.00	2.577	8.87	2.96	6.1	93.9	0.0	0.48	1.82	0.54	0.69	1.15	5494	675	1	0	0	0	0	logfile
✔	7B52	12017	2024-09-26	2020-12-03	3.8	4.98	—	3.9	0.004	0.84	0.0	0.04	14.20	0.00	2.035	24.47	0.07	16.4	83.4	0.2	-2.23	0.83	0.84	0.97	3.9	0.003	0.72	0.0	0.04	15.32	0.00	2.503	12.61	0.85	12.8	87.2	0.1	-1.41	0.93	0.83	0.83	0.70	13186	1638	1	0	0	0	0	logfile
✔	7Q60	13848	2024-09-25	2021-11-05	3.13	3.73	—	3.4	0.007	1.26	1.0	0.07	15.64	0.01	2.271	5.00	0.57	5.2	94.8	0.1	-2.64	0.77	0.74	1.79	3.4	0.003	0.70	0.0	0.04	15.88	0.00	2.458	8.83	3.04	4.6	95.3	0.1	-0.94	0.41	0.77	0.75	1.71	9450	1212	1	0	0	0	0	logfile
✔	7Z1H	14446	2024-09-27	2022-02-24	3.12	4.01	—	3.5	0.016	0.97	2.0	0.04	12.32	0.00	1.830	20.25	0.18	10.8	88.7	0.5	-1.31	0.79	0.79	1.28	3.5	0.016	0.95	3.0	0.04	14.32	0.00	1.914	16.40	1.02	10.8	88.7	0.5	-1.14	0.93	0.79	0.77	1.38	15032	1848	1	0	0	0	0	logfile
✔	7Q5Z	13847	2024-09-25	2021-11-05	3.25	3.74	—	3.3	0.005	1.00	1.0	0.06	12.76	0.01	1.750	5.22	0.09	6.2	93.6	0.2	-2.07	0.80	0.69	1.18	3.4	0.003	0.66	0.0	0.04	14.14	0.00	2.492	10.78	1.79	5.6	94.4	0.1	-0.57	1.18	0.81	0.73	1.23	10489	1344	1	0	0	0	0	logfile
✔	7XoN	33353	2024-09-23	2022-05-01	3.1	3.66	2.94	3.3	0.002	0.47	0.0	0.04	12.44	0.00	2.325	9.45	0.00	1.5	98.5	0.0	2.61	0.57	0.88	2.21	3.3	0.006	0.60	0.0	0.04	14.10	0.00	2.625	9.07	1.49	1.3	98.7	0.0	2.27	0.43	0.59	0.91	2.25	3855	524	1	0	0	0	0	logfile

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