Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ADE	15361	2024-09-23	2022-07-08	2.78	2.65	2.55	2.7	0.012	1.58	0.0	0.11	9.64	0.00	2.213	3.08	0.00	3.4	96.6	0.0	-4.12	0.74	0.76	3.27	3.0	0.007	0.79	0.0	0.05	15.30	0.01	2.602	14.72	2.20	2.1	97.9	0.0	-2.44	0.74	0.77	0.84	4.59	5026	644	7	0	0	0	0	logfile
✔	6SDZ	10150	2024-09-24	2019-07-29	2.97	3.77	2.34	3.5	0.009	1.13	0.0	0.08	12.17	0.01	2.263	27.39	0.12	5.5	94.5	0.0	-3.05	0.89	0.88	3.72	3.5	0.006	1.10	0.0	0.05	15.51	0.01	2.445	21.76	2.80	6.4	93.6	0.0	-3.16	1.94	0.85	0.86	3.86	7909	1012	11	0	0	0	0	logfile
✔	8J7Y	36053	2024-09-25	2023-04-28	3.4	3.79	3.40	3.7	0.002	0.50	0.0	0.04	13.14	0.00	1.914	7.04	0.16	3.1	96.9	0.0	1.40	0.75	0.80	1.82	3.7	0.003	0.68	0.0	0.04	15.05	0.00	2.156	7.31	1.22	3.3	96.7	0.0	1.13	0.69	0.78	0.88	2.59	11008	1426	8	0	2	0	0	logfile
✔	8BXB	16314	2024-09-26	2022-12-08	3.9	4.23	3.84	4.2	0.004	0.78	0.0	0.05	13.50	0.01	2.256	7.26	5.55	3.9	96.1	0.1	-2.59	0.68	0.77	1.32	4.1	0.003	0.68	0.0	0.04	14.56	0.00	2.484	10.00	3.57	4.7	95.3	0.0	-0.83	0.86	0.66	0.80	1.29	12547	1630	14	0	5	4	0	logfile
✔	5Z1L	6876	2024-09-30	2017-12-26	4.0	3.76	—	4.0	0.004	0.99	0.0	0.07	9.07	0.01	2.380	2.79	0.65	12.5	87.5	0.0	-4.25	0.53	0.79	—	4.0	0.006	0.86	0.0	0.06	14.95	0.00	2.298	6.99	5.34	17.9	82.0	0.0	-2.98	0.64	0.55	0.81	—	25560	3582	18	0	0	0	0	logfile
✔	7M65	23689	2024-09-23	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.87	0.0	0.04	11.93	0.00	2.278	16.31	0.00	16.5	83.5	0.0	-6.04	4.40	0.51	0.72	—	2025	275	15	0	5	0	0	logfile
✔	7Q66	13853	2024-09-23	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.77	0.0	0.05	16.37	0.00	2.516	11.85	11.07	0.3	99.7	0.0	-4.14	0.68	0.62	0.88	4.12	4807	682	22	0	0	0	0	logfile
✔	3J8A	6124	2024-09-27	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.004	0.81	0.0	0.05	16.73	0.00	1.913	12.28	5.95	6.1	93.4	0.6	-2.09	0.49	0.71	0.83	1.68	15800	1835	12	0	280	0	0	logfile
✔	8iFZ	35427	2024-09-25	2023-02-20	2.85	3.79	3.41	3.2	0.004	0.60	0.0	0.04	17.66	0.01	2.185	5.99	2.31	3.8	96.1	0.1	-1.72	0.73	0.76	1.98	3.3	0.003	0.69	0.0	0.04	17.31	0.00	2.038	5.43	2.89	3.2	96.8	0.0	-0.61	2.92	0.75	0.87	2.15	6506	789	3	0	6	0	0	logfile
✔	8iDE	35365	2024-09-24	2023-02-13	3.21	3.58	3.38	3.5	0.003	0.71	0.0	0.04	13.14	0.00	1.906	14.45	0.24	14.1	85.4	0.5	-1.37	0.75	0.77	2.17	3.5	0.003	0.76	0.0	0.04	15.39	0.00	2.223	13.25	4.21	13.2	86.4	0.3	-1.51	0.72	0.76	0.80	1.87	8393	1177	3	0	1	0	0	logfile
✔	7K20	22638	2024-09-26	2020-09-08	3.2	3.37	—	3.2	0.013	1.02	0.0	0.06	10.52	0.01	2.141	3.41	0.00	4.5	95.5	0.0	-5.12	0.72	0.87	4.12	3.2	0.003	0.62	0.0	0.04	13.25	0.00	1.912	6.27	0.72	2.1	97.9	0.0	-0.07	1.12	0.73	0.88	2.90	11828	1488	8	0	12	0	0	logfile
✔	8BCU	15968	2024-09-28	2022-10-17	4.05	3.79	3.99	3.9	0.004	0.55	0.0	0.04	16.80	0.00	1.950	12.32	0.15	6.6	93.3	0.1	-0.88	0.75	0.66	—	3.9	0.004	0.68	0.0	0.05	14.13	0.00	2.414	12.38	0.00	4.1	95.9	0.0	-1.28	2.10	0.83	0.82	—	18279	2349	9	0	0	0	0	logfile
✔	8SS9	40748	2024-09-27	2023-05-08	2.72	2.88	2.72	2.9	0.014	1.36	0.0	0.23	17.97	0.01	2.329	4.43	0.36	3.9	95.8	0.3	-4.92	0.67	0.78	3.56	2.9	0.003	0.79	0.0	0.06	18.57	0.00	2.434	7.34	2.32	3.3	96.7	0.0	0.97	3.75	0.69	0.82	3.14	16319	1986	12	0	26	15	0	logfile
✔	6SKK	10226	2024-09-25	2019-08-15	3.6	3.76	3.63	3.7	0.003	0.60	0.0	0.04	12.96	0.00	2.319	7.60	0.18	1.7	98.3	0.0	-1.14	0.70	0.75	1.70	3.7	0.003	0.69	0.0	0.04	17.10	0.00	2.377	9.77	1.78	2.6	97.4	0.0	0.99	0.69	0.70	0.77	1.52	10328	1320	6	0	0	0	0	logfile
✔	7Q65	13852	2024-09-23	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.004	0.67	0.0	0.03	13.35	0.00	2.571	10.69	7.58	7.9	92.1	0.0	-5.24	0.68	0.57	0.84	4.51	6204	880	22	0	0	0	0	logfile
✔	8ADU	15370	2024-09-23	2022-07-11	3.24	2.85	2.78	3.3	0.007	0.82	0.0	0.07	15.52	0.00	2.296	20.22	0.00	11.3	88.7	0.0	-4.91	0.52	0.82	3.23	3.3	0.005	0.78	0.0	0.05	17.21	0.00	2.526	14.33	6.09	12.2	87.8	0.0	-4.26	1.13	0.50	0.81	3.01	3460	495	5	0	0	0	0	logfile
✔	6SKM	10228	2024-09-25	2019-08-16	4.9	5.09	4.66	4.9	0.004	0.64	0.0	0.04	9.23	0.00	1.449	9.83	0.18	1.4	98.6	0.0	-1.03	0.68	0.74	—	4.9	0.004	0.81	0.0	0.05	13.11	0.01	2.292	16.94	0.18	3.0	97.0	0.0	0.06	2.75	0.70	0.80	—	10336	1320	6	0	0	0	0	logfile
✔	7M64	23688	2024-09-23	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.004	0.92	0.0	0.04	12.06	0.00	2.436	6.78	0.95	4.3	95.7	0.0	-3.82	1.15	0.51	0.74	—	1850	250	20	0	10	0	0	logfile
✔	8iUo	35728	2024-09-27	2023-03-24	3.96	4.36	3.95	4.1	0.008	0.74	0.0	0.04	16.37	0.00	2.141	3.20	2.19	7.8	92.2	0.0	-2.44	0.61	0.83	1.79	4.0	0.003	0.69	0.0	0.04	17.74	0.00	2.475	6.16	1.40	4.2	95.8	0.0	0.65	2.06	0.62	0.86	1.29	14785	1810	6	35	0	0	0	logfile
✔	7F29	31428	2024-09-23	2021-06-10	3.1	3.08	—	3.2	0.014	1.07	0.0	0.06	14.68	0.00	2.305	11.88	0.00	14.3	85.7	0.0	-3.96	0.42	0.83	5.02	3.2	0.002	0.54	0.0	0.05	14.37	0.00	2.646	1.70	0.00	9.5	90.5	0.0	-1.94	1.56	0.41	0.83	5.57	1794	222	18	0	18	0	0	logfile

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