Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Z2J	11041	2024-09-28	2020-05-16	4.0	4.25	3.91	4.2	0.005	0.83	0.0	0.27	16.35	0.00	1.987	3.28	0.39	7.9	92.1	0.0	-3.35	0.69	0.63	—	4.2	0.003	0.66	0.0	0.04	17.32	0.00	1.914	8.26	1.08	8.7	91.3	0.0	-1.86	1.88	0.70	0.67	—	18876	1185	8	0	8	0	9273	logfile
✔	7TNL	26013	2024-09-28	2022-01-21	3.59	3.31	—	3.4	0.009	1.03	0.0	0.06	11.86	0.01	2.246	4.01	0.38	4.6	95.1	0.2	-4.39	0.72	0.83	3.45	3.4	0.003	0.61	0.0	0.04	15.03	0.00	2.562	7.25	2.40	3.7	96.3	0.0	0.89	1.11	0.73	0.83	2.83	19434	2486	10	0	4	0	0	logfile
✔	7X90	33062	2024-09-24	2022-03-15	4.2	4.77	4.13	4.4	0.003	0.58	0.0	0.04	13.96	0.00	2.191	10.21	0.00	11.8	88.2	0.0	-3.08	0.77	0.73	—	4.4	0.002	0.56	0.0	0.04	13.47	0.00	2.360	8.04	0.00	9.7	90.1	0.2	-2.69	1.43	0.75	0.75	—	6441	420	4	0	2	0	3140	logfile
✔	8AZ6	15755	2024-09-23	2022-09-05	3.1	3.15	3.07	3.1	0.004	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.006	0.63	0.0	0.04	14.10	0.00	2.223	2.58	4.74	5.7	94.3	0.0	-4.92	0.78	0.51	0.87	6.66	3420	460	40	0	20	0	0	logfile
✔	7QEW	13943	2024-09-25	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.69	0.0	0.04	14.49	0.00	2.556	5.30	1.59	3.1	96.9	0.0	3.03	1.06	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	7TNK	26012	2024-09-28	2022-01-21	4.5	3.85	—	3.8	0.005	1.01	0.0	0.05	11.81	0.01	2.244	4.82	0.40	5.0	94.9	0.1	-4.97	0.71	0.73	—	3.8	0.003	0.68	0.0	0.04	13.20	0.00	2.473	11.49	0.00	4.3	95.7	0.0	-0.07	0.95	0.72	0.73	—	18934	2419	9	0	4	0	0	logfile
✔	7oPL	13020	2024-09-28	2021-06-01	4.12	5.46	3.80	3.9	0.004	0.77	1.0	0.05	14.34	0.01	2.116	18.14	0.05	4.5	95.5	0.1	-0.84	0.90	0.77	—	4.0	0.004	0.70	0.0	0.04	14.49	0.00	2.347	16.62	0.00	4.9	95.0	0.1	-0.51	0.61	0.92	0.84	—	19743	2442	8	0	4	0	0	logfile
✔	7X0V	32926	2024-09-27	2022-02-22	3.2	3.39	—	3.3	0.005	0.61	5.0	0.05	10.89	0.00	1.018	6.95	3.50	4.9	95.1	0.0	-5.90	0.79	0.77	1.76	3.3	0.003	0.73	1.0	0.04	15.94	0.00	1.829	8.80	2.46	5.4	94.6	0.0	0.19	4.28	0.82	0.85	1.46	65000	8440	48	0	48	16	0	logfile
✔	9B6D	44255	2024-09-25	2024-03-25	3.3	3.65	3.19	3.6	0.005	0.82	0.0	0.06	12.33	0.00	2.027	6.39	0.49	3.1	96.9	0.0	1.86	0.72	0.81	2.12	3.5	0.005	0.64	0.0	0.04	12.87	0.00	2.244	3.94	1.28	5.3	94.7	0.0	1.95	1.23	0.73	0.83	2.45	54584	3732	8	0	20	0	25920	logfile
✔	7DKJ	30707	2024-09-28	2020-11-24	3.7	3.30	3.58	3.5	0.007	0.87	0.0	0.05	20.25	0.01	2.056	18.54	1.84	7.1	92.9	0.0	-2.34	0.62	0.75	2.13	3.5	0.004	0.71	0.0	0.05	17.15	0.00	2.384	12.29	3.04	5.5	94.5	0.0	-1.23	0.60	0.62	0.73	2.23	20112	2490	18	0	27	0	0	logfile
✔	7F5U	31467	2024-09-29	2021-06-22	4.1	4.16	—	3.9	0.007	0.80	0.0	0.04	14.71	0.00	2.101	24.28	0.00	12.3	87.6	0.1	-4.58	0.82	0.84	—	3.9	0.004	0.72	0.0	0.04	14.02	0.00	2.394	10.56	0.00	7.9	91.9	0.1	-1.05	1.28	0.82	0.83	—	20744	2740	4	0	0	0	0	logfile
✔	6N23	9321	2024-09-26	2018-11-12	3.1	3.91	—	3.6	0.008	0.78	0.0	0.05	9.58	0.01	2.040	2.43	0.00	3.3	96.7	0.0	-5.52	0.79	0.87	4.09	3.6	0.002	0.56	0.0	0.04	12.47	0.00	2.377	3.81	0.98	2.0	98.0	0.0	2.05	2.23	0.73	0.85	2.90	14935	1815	10	0	5	0	0	logfile
✔	6KZ3	0784	2024-09-28	2019-09-23	3.1	3.29	—	3.2	0.006	0.68	0.0	0.05	13.19	0.00	2.194	9.64	0.82	11.2	88.8	0.0	-4.17	0.82	0.86	3.00	3.2	0.003	0.65	0.0	0.04	14.48	0.00	2.534	7.83	1.54	8.7	91.3	0.0	-1.47	1.38	0.81	0.87	2.92	20046	2646	6	0	0	0	0	logfile
✔	7BSP	30163	2024-09-25	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	15.68	0.01	1.928	53.93	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	4.0	0.003	0.78	0.0	0.04	16.23	0.00	2.500	11.15	3.07	6.9	93.1	0.0	-2.38	0.62	0.68	0.87	—	11010	1352	5	0	5	0	0	logfile
✔	6WW7	21929	2024-09-27	2020-05-08	3.4	3.55	3.33	3.5	0.005	0.58	0.0	0.04	15.89	0.00	2.145	6.99	2.92	2.9	97.1	0.0	-2.34	0.76	0.84	2.50	3.5	0.003	0.62	0.0	0.04	16.66	0.00	2.428	8.33	3.25	3.5	96.5	0.0	-0.21	0.55	0.80	0.87	2.48	16576	2060	13	0	20	0	0	logfile
✔	8B40	15835	2024-09-26	2022-09-19	4.6	4.13	4.51	3.6	0.002	0.50	0.0	0.04	10.45	0.00	2.149	11.85	4.31	4.2	95.7	0.0	-0.38	0.77	0.69	—	3.6	0.002	0.62	0.0	0.04	10.97	0.00	2.027	11.60	0.00	5.1	94.9	0.0	-0.90	1.00	0.77	0.66	—	39466	4844	7	0	0	0	0	logfile
✔	7TNP	26017	2024-09-28	2022-01-21	3.96	3.45	—	3.6	0.008	1.09	0.0	0.06	12.46	0.01	2.280	4.16	0.70	5.4	94.5	0.1	-4.96	0.71	0.76	2.12	3.4	0.006	0.91	1.0	0.04	15.82	0.00	2.236	14.89	2.49	3.9	96.0	0.1	0.26	1.25	0.71	0.77	1.53	18840	2408	12	0	4	0	0	logfile
✔	6PLP	20371	2024-09-26	2019-07-01	3.3	3.51	—	3.8	0.002	0.53	0.0	0.05	11.13	0.00	2.031	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.7	0.003	0.66	0.0	0.04	13.15	0.00	2.537	8.10	2.71	2.9	97.1	0.0	-0.79	2.00	0.50	0.79	2.87	14240	1730	15	0	20	0	0	logfile
✔	7YFG	33789	2024-09-29	2022-07-08	3.6	3.14	3.54	3.5	0.011	1.14	1.0	0.05	17.45	0.01	2.035	10.50	0.22	5.9	93.9	0.2	-0.95	0.77	0.79	2.58	3.5	0.003	0.60	0.0	0.04	16.61	0.00	2.453	6.17	2.49	6.4	93.5	0.1	-0.45	0.36	0.76	0.80	2.17	21215	2620	25	0	48	0	0	logfile
✔	6S5T	10100	2024-09-24	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.48	3.0	0.09	17.70	0.00	2.450	5.08	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	4.2	0.005	0.75	0.0	0.04	15.53	0.00	2.499	8.98	0.00	5.7	94.3	0.0	0.03	1.47	0.75	0.82	—	6958	896	3	0	1	0	0	logfile

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